Gene detail

Detailed information of Ppa0G198210 in Paragorgia papillata

Genomic Location: Contig00299:588108...608184
NR annotation: CAB4009909.1, calmodulin-regulated spectrin-associated 2-like isoform X2 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G198210

ATGGACGGAGTGAGCGGATTAGATGTGTTGTCTAACGATGGAATATTGGATATTATTCCTCCAAGCGAGTATGACCCATTTGAGGCAAAGTTTTGTGCTTCATTATTTTGGCTTGTCTTCCATGCAACTGAAGATGGTGGATTAGAAGATGTTCCTTCACAAGTTACAAGTCCAATCCAAAAGCTGGACGAAAACAATGGTTTTGTCATTCATCCCGAGGTTGTACAGTTTCTTACAAAAGGGGAAGTTTACTGTACTGTGTGTACAAGGATTTTTCCAGGAAAAGTTGCCTTAGCTGGTCACTGGTCTGTTATCCAGACCTTATCTAGAAATGGTATTTATGTTGTGGATGGAACCACTGATATTGCTATCACAGATTCATCTTTGGAACAGACAAACCCATTTCACCAAGGTGCACATGTAGCTCTTATGGATGCTTTAATGACTGCATATTCTTCCCAAGTTGTCAGCATTCAGAGTGTGGTTCAAGCTGTTAGACGGTTTTCGACATTCAGTGCATCAAGAGAACTACCATTTGATTTGGAGGACGCTCTTCTCTTGTGGGTGAACAAACTGACTGTTGCTGTCAATTCGAAACATATCAAGCCTACACCAAGTAATACAAGAAAATTACTGCGCAACAGAGGACAGGAAAGAAAAATAGAACTTCGTGTAGACAATTCAGAAGAGACGTCTTCTACTGTACTTCCTGTAATTGACGATCTTTTAAAAGGACTTTGTGATGGCAGATGTCTGTTGGGAGTATTGTTGTTCTATGAACCAACTGTTATTAAGATTGAAGATATTTGCTCCGGCCGTGTCCTCTCAACGGATGATTCCTTTCGCAATCTAGACCTTTTCCGTGGTCTGTGCAGCCAGTATTTCTGTACTTCAGTGCTTGCGCTGAAGGTCGAAGACATTCTTTACGGTTCGCCTTCACTGAAAATAAACCTTGTGGCGCTACTGGCAGAGATGTTCTCCAAATGTGAAGGAAACTTAAAACAAGGTCAGGAAGTTCAACGCAGTAAGACTTCATGCTCTGATAATGGAGAAACTAAGATCAACGGTTACGGTGAAAGTAGTACTAGAAGTCACAACAAGGATATTTCGTTGAAAATTCAAAACTTTGTGGAAAACGTTGGATCGTCGGGGGACGATCTAAAATCTGTTAGAAAGCCGGTGTCAACCGAGAACGCGACGTCTGTGACCAACGTGCGTTCACCCGCGGCGTCTGACGACGTGCTTGAGAATGAAGATACCGTAGAGGTCGGAGGGGTGGTTGTTAAACTACGGAAGAAAGTACCTCGGAATGTTGAACCCGGTGGTGGTCACGAGGCTTTGCTTTCTCGACGAATGAAGCAGAGTTTGTGTAGTTGGAGTCAAGAGGATGTTTCAACTGATACGACGCCTAGAACTAGCGATCCTGAGGACCAGTTTGACGCCAAGTCTGACGAAGTTCTTCAAGAAATCCAACCTGAGCCTACGGATTGCTCAGCGGATCCCGAAGAAACTTTCTCCAAGACTGTCGACAATGTTGATTTGGGAAACTTAGATCTCGCATCACCTCATTCCTTGGACCTCAATCTTAACACACTCCCAGAAGCCATCACACCTATCGACCTACTTTCCCCAATCTCCGAAACCACCGAACCGGGATCACTGGGTAATTCCCTCAACGGATCTATGACGTCACCTCGCGATTTACATTCACCAGTCAGCGATGCCACTTCCGTATTACGTCATGAGAAAAACCGGGGGGTTGGTCATGAACGATTAACGCCACCTCTTTCACGAACTCCGCGAAAATTGACCGGTGAAAACCATAATTCCTTAGAAGAGACCTCAGTTCCACGTGGCAGTTACATCATCAGTGACGCCTCCCATACCCTTGAGTCAGCGGTTGCTGCTGGAATTCCTGTCGTTGAACGCGAGTCGCTGGGGATGTCGGGAACATCTCGTGGAAATTCGCTCCCTTGTTCGACTCGTTCGAGTGATGGTGCTATGTTATTTAGAACTTCGTTTCAGACAATGGAGTCGAGCAAAGAGACAAGTGAACTGGGGTTGACTGGTTCAAGTGCAACACTACCTGAAGAGGCGAATAGCGCCCACGAACATCCCGTCATTAATGACCAGCGGCGGTATTCGTCGGAAAACCGTTGGTCTGATCATGACAGGAGAAACACTAATCGTTTTTCAACGTTTAAGAAAAACAAGAAAGCTAGCAATGAAGAAGAACTTATCGCTTCTCCTCAAAAGTATTTCACGGTCACGCGGAATGGAATCGACGGAGAATCACCTGAACGAAAGAACGATACTCCTAGTTCAGATCCCGCTATAACCTGGTTTGTGGAGCGGAAAAATGAATCAGGTCCCCAGAAAGAGACTATTTCTAGAAACACTGAGACTGTCAATCACGTGTCTCAGCGCGCAGGATCAGACTCTGGTGGGAAAACTACGAACTGGGCAATGGTTGCAGACGAGATTACGCAGAACTCGGAACCTGTGAAAAAAGAGATGGACTCAAATTCAGAGGGTTTTAAACTTGAAGAGACAGATATACCTGGTGCAAAACTTCAAAAACCAGTTGAACAATGCACAGTTGCGGTATTAAAGCGGTGGTTATTGTGTCGTGGTGCGAAAGTCAAGGGAAAGCGACAAGATTTAGTGCAAAGGGTCAGTGATTACATAAATAATGGGCTGGACAAAAATATAGTTGATCCAGATGATGGTGTAAATTTGGCAAAGAAAAGACTAGAGCTTGGCCTGGCCGAAGAAATTCACCCTGAAGTGAATGAAAATTTTCCTTCCACTGGGTTCGAATGTGGGACAACCAATCTCCCAAGAATATCTTATCGCAACATTTGGAAGTATTTAATAGATGACGTAGAATTGAAAAAGCAACTGTCCACAGAAAAGCCTATAATTTTCTCAAAAAAGGAACAGCATAAACATTATGTTTTAAGTAAAGTACTTCCATCAATGAAAAAAGGGGTGGATGGTCGCTGTAACCATCTTGCTGCAACTTTGTTCGCATTAGAAGACAAAACTGCTACAGAGAATGGTATGGTGGCTGCTAAGGTACAAAGCAGAACACCAGAAAACAAACCTTGCACATCAAAGCCTTTGCAAATGGAATGTTCCTAG

Transcript

Ppa0G198210

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5T5Y3	Calmodulin-regulated spectrin-associated protein 1 OS=Homo sapiens OX=9606 GN=CAMSAP1 PE=1 SV=2
A5WUN7	Calmodulin-regulated spectrin-associated protein 1-B OS=Danio rerio OX=7955 GN=camsap1b PE=3 SV=1
Q6IRN6	Calmodulin-regulated spectrin-associated protein 1 OS=Xenopus laevis OX=8355 GN=camsap1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002025 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11971 all species →	CAMSAP_CH	CAMSAP CH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022613 all species →	Domain	Calmodulin-regulated spectrin-associated protein-like, Calponin-homology domain	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR032940 all species →	Family	Calmodulin-regulated spectrin-associated protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21595 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0007026 all species →	Biological Process	negative regulation of microtubule depolymerization	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0031122 all species →	Biological Process	cytoplasmic microtubule organization	Interproscan
GO:0036449 all species →	Cellular Component	microtubule minus-end	Interproscan
GO:0051011 all species →	Molecular Function	microtubule minus-end binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G198210.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.