Gene detail

Detailed information of Ppa0G198630 in Paragorgia papillata

Genomic Location: Contig00299:1373872...1375977
NR annotation: CAB4043534.1, General transcription factor IIH subunit 5 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZKH0	General transcription factor IIH subunit 5 OS=Gallus gallus OX=9031 GN=GTF2H5 PE=3 SV=1
Q2T9Z5	General transcription factor IIH subunit 5 OS=Bos taurus OX=9913 GN=GTF2H5 PE=3 SV=1
Q6ZYL4	General transcription factor IIH subunit 5 OS=Homo sapiens OX=9606 GN=GTF2H5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011507 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06331 all species →	Tfb5	Transcription factor TFIIH complex subunit Tfb5	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009400 all species →	Family	TFIIH subunit TTDA/Tfb5	Interproscan
IPR035935 all species →	Homologous_superfamily	TFB5-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28580 all species →	GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000439 all species →	Cellular Component	transcription factor TFIIH core complex	Interproscan
GO:0006289 all species →	Biological Process	nucleotide-excision repair	Interproscan
GO:0006367 all species →	Biological Process	transcription initiation at RNA polymerase II promoter	Interproscan
GO:0005675 all species →	Cellular Component	transcription factor TFIIH holo complex	Interproscan
GO:0006294 all species →	Biological Process	nucleotide-excision repair, preincision complex assembly	Interproscan
GO:0006366 all species →	Biological Process	transcription by RNA polymerase II	Interproscan
GO:0070816 all species →	Biological Process	obsolete phosphorylation of RNA polymerase II C-terminal domain	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10845	TTDA, GTF2H5, TFB5; TFIIH basal transcription factor complex TTD-A subunit	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.