Gene detail

Detailed information of Ppa0G200800 in Paragorgia papillata

Genomic Location: Contig00303:1175591...1186937
NR annotation: XP_028393869.1, high affinity cationic amino acid transporter 1-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G200800

ATGAATAAACTGCTGCAGGCGTTTACGCGAACCAAGCACTTGACGTTGAAAGATATTCAAGAAACCAAACTCCGTCGTTGTTTATCGACACTCGATCTTACTTTGCTTGGTATTGGCTGCACATTGGGTGCGGGCGTGTACGTCATTACTGGAGAAGTTGCAAGGCTTCAAACTGGACCAGCGATTGTCCTTTCATTTACGATAGCCGCCGTAGCGTCCATCCTCTCTGGCCTTTGCTATGCCGAGTTTGGTGCTAGGGTACCTAAAGCTGGCTCGGCTTACATATACAGCTACGTCACGATTGGCGAATTGTGTGCGTTTATCATTGGCTGGAACTTGGTCCTCGAATATATTGTCGGTGCGTCTTCTGTTGCGAGGGCATGGAGTGCGTTTTTTGATTCCCTCTCTGGTAATCGTATTCGCAACTTTACGTTAAGCCATATTGGCAAAATTAATGTACCGTGGATGTCCGAGTATCCAGACTTTTTGGCTTTAGCGTTCATCATAGTGATAACTCTGATTTTGATTTCTGGGGCCAAACAGACTTCTTTTTTAAACTGGTTTTTTACATGTATAAACTTGAGTGTGATCCTATTTGTGACGGTCAGTGGTTTCGTATTTGCGGAGGCGAAGAACTGGGATAATTTTATGCCATATGGGTTCAGTGGCGTGATGACTGGGGCAGCGACTTGCTTCTATGCTTTTGTTGGATTTGATGCTGTGGCCACATGTGGAGAGGAGTGTAACACACCGAGCAAGTCAATCCCGAGAGCAATCATTGGATCTTTATCGATCTGTTTCCTTGCCTATGCTGCTGTCTCAATTGCACTGACTTTGATGATCCCTTACCACGACCTGGCGCCAAACACAGCGCTCGCCACCGCCTTCGAAGACAAAGGACTAACATTCGGCAAATACGTGGTTTCCGTTGGCGCCATTTTTGGTCTTTCGTCCAGCGCCCTCAGCGGGCTCTTTCCCCTTCCCAGAATACTGTACGCCATGGGAAGCGATGGCGTCATTTTCAGTTTCTTCACACGAGTTAACGAACGCACGGGAACCCCGATCATCAGTTGCATTTTCAGCGGGTTAATCACGGGAATACTGGCGCTAATTTTGGACTTAGTCTCCTTGGTAGAAATGCTTTCGATAGGCACCTTACTGGCGTACACCATAGTCGCACTTTCCGTCCTCTTATTGCGCTACAAGCCTGGCAGTTTGGTCATTACCGCTGCAGGTGTGGACAGCAGACGCACTAGTATGAGCAGCAATTCGGACACGGAGAACGCTGACGCCCAAAAGGACCGTAGCGGAACAGTGGAAGATCGTGACAGTAGAGTGGATTCGGTGAATGTAGATGGCGAGATGAACACGGGAATCTCTGGGGAGCAATCAACCAAAATTGAGGCAGAAGAGCTAGATAACTGCAATACAAGCGATAAAGGACGTTTATTGCACGACTCGGAAGAAAGTCCACCGACAAATCCAACAGACACTTGGGTTTCTAGATTTTCTCGACATCTCCTGGGAGAACGTCTAGATGAGCCAACTGAAGAGACCTACTGTGTTGTCAAGGTAGCGGTGGCGTTGTTCGTCGTGCTCTGTATTGCCCTCGAGGGATGTATAATCTGGGGAGAACATGGTCTGACATCTAAGGACCCCTTTATGATAATTTTGTTTGTTTTTCTACTGGTCTCGCTCTTACTCGTGGTCGAAGTGATTGGTCGTCAACCACAATCGAAGAACGAGTTGCCATTTAAGGCGCCGCTCCTTCCGCTCACGCCACTGTTGGCTATTTTTGTTAATATGTATCTCATTTTAATGCTCTCGCATTTGACTTGGATACGGTTTGGTATCTGGATGACGATAGGCATGGCAATTTATTTGTTTTATGGAGTAAAACACAGTACGGAAAACAAAGATCGTTCGGAGATGGTCAATCGGGGTTATTTGAAGCTGAGTAGCAGTTTACGAGACGATGATAAGTTGAAGTAA

Transcript

Ppa0G200800

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q09143	High affinity cationic amino acid transporter 1 OS=Mus musculus OX=10090 GN=Slc7a1 PE=1 SV=1
P30823	High affinity cationic amino acid transporter 1 OS=Rattus norvegicus OX=10116 GN=Slc7a1 PE=2 SV=1
P30825	High affinity cationic amino acid transporter 1 OS=Homo sapiens OX=9606 GN=SLC7A1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000351 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13520 all species →	AA_permease_2	Amino acid permease	Family	Interproscan
PF13906 all species →	AA_permease_C	C-terminus of AA_permease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002293 all species →	Family	Amino acid/polyamine transporter I	Interproscan
IPR029485 all species →	Domain	Cationic amino acid transporter, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43243 all species →	INNER MEMBRANE TRANSPORTER YGJI-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000064 all species →	Molecular Function	L-ornithine transmembrane transporter activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006865 all species →	Biological Process	amino acid transport	Interproscan
GO:0015171 all species →	Molecular Function	amino acid transmembrane transporter activity	Interproscan
GO:0015181 all species →	Molecular Function	L-arginine transmembrane transporter activity	Interproscan
GO:0015189 all species →	Molecular Function	L-lysine transmembrane transporter activity	Interproscan
GO:0097638 all species →	Biological Process	L-arginine import across plasma membrane	Interproscan
GO:1903352 all species →	Biological Process	L-ornithine transmembrane transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G200800.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.