Gene detail

Detailed information of Ppa0G201230 in Paragorgia papillata

Genomic Location: Contig00304:337476...341039
NR annotation: XP_028410035.1, dermatan-sulfate epimerase-like protein [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G201230

ATGATTCGTGCAGGGTTTCAACTGATGCCTTCAACTACCAATCTCTTGACGCTATTCCTCGTCGTATTCTTACAATCTACAAAGGTTTTAGTCGCAAACATGAATAATCAGACTGGGCGGAGAGAAGCATTGCCATCTGTGTCGACGACTGATCAGATAAAGCAAGGATACCCTAATCTTTACTTCTCGGCGAACGATGTGCCCAGGCTGCGGCTTCTCGTGAATACCAGTCACGCACACCTCTATACTAAGTTAACTCAAATTGTGCGCGAAATAACGGCTCCACCAGACAGCTGGAAAAACTTTTCTGCCAGATGGAACGTGGTCTACGGTAATAGCCTAGCCACTTTGGCGACCTACTGCGTTTTAACTCCGCACGACCACCAAGCGTTTGGCCTTGCCAAGTTATTCATGGACAAATTTGTGCGCTATCCTAGCTGGCGTGTTCAAAGCAAGGAAAAAGACGACGTACCAGTGGCGCATACTTTACTTGGTTTCCTAACCGCATTCGACTTCCTTCACGATACGTTCACGATATCCGAGCGACTGCGCTATCGCGTCAAACTTCGAGAAACCAGCGCAGAGCTTTACGAAATGTCGTACAAACGTTGGTGGGGGATATCTTTCATTCATAATCACGTTCTGACGAATTACGTGGCCTTGCTAACTGCGGCTATTGTCCTTCGACCGTACTACCCCGACGAAGCCATGACGTGGCAGAAAAGAGCGATTGTTAACTTGGACAGCACAATGCAATTTCTCAATATAGTCGTCGATGGTTCGCTTCAGGAGGGGGTCTCGTATGGCTCATATTCAACGAAGTCTATCACGCAGTTTATGTTCTTCACCAAGCGCCATTTCCGCTCTAGCTACAGCAACAATACCTGGGTACGCGCGCACTTCGACTTCCTTATTCATTCGATACTTCCTGGTTTTCAGATGACCGTCGGCTTCGCGGACTCGAATCAGGACTGGGCCTACGGTCCGCAGAGCCAGCTGACATTCCTCGAAAGTTATGTGTACCGCGACGGCAAGGCAATTTGGCTTGCGAACCAGATTAGGAAATTTCGATGGGGCGCAAAAATTAGAAATGTCCTAGCGCTGAAGTACTCTACATTACACACCGAGCTACTGTTCTATAATGATACTATCAAAGAAACTCCTTCAAATCACTCAAAGCTCCACGTGTTTAGTGACTGGGGTGTGATTACGTATGGGGGTGGAACGCCGGCCGGAGACACATTCCTCTCGTTTAAATGCGGTCGTTTGCACGGTCGCGCGATAAACACGCTTCGGCCAAAGTTAAGTGAATTATTGAAATCAGGCTTTAACCCTGGCCATGAACATCCAGATCACGGGTCGTTTGTTTTCATATCGAAGGAACAACCGGTGGTAACCGAGACCTTGTATGGGCCCAAGTTAACGTTTCTCCAGAACTCCTTGATGTTCGGCTCAGCTAAGCATTCGACGTGTTCCCGTGGTTACCAAGGTCAGCTGGGCGAAGGTCGTACCTGGTTTAACCATTCCGACCGTCGTACATGGCAAGCAAATGGTGAGCTGGTAGGGTATTCGCAACATGGTGATGTCGTTTTCATGAGTGGTGATATGACAGCGTGGTACGATCAATGCCTTGGGTTAGACAGTGTTTATCGATCTTTGGTCATGCTTTCACCCACCGCCCTCGTGGTGATCGACGTCATTCGTCGTCGGAAACCGTTAGTGGTGACACACGCCAGCGCATTTTTCCATAATCTTCATATAGCATTCGAGAAGAGGGCGAAGAGTCGTAGCAGGCAACCATGTGCTCGCGTTGGTCGTTTCTCACTGTGTTGGGCCCACTATAACAGTAGGACAGTGAACGTAACAACTCAGACTAACTTCAAGGTAAAAGGCGCTAAGTACGCCACTAACTTCATCAATGTGACATCGCGCTTTTTAAAACCATTATCAAGCACAGTTTATATTTTTCACGGTCCCGACGACATTCTTCACCATGTGGAAGTCAACCGGGTATTGCGAGATGGAATCAACATTAACCTGCAACTGAACGCGAATGACTACGACATCAATGTATCTACGAGGCCCAACAACCCGCGTCTCCGCAGGCGCTTCGTTGGCTCTGCTGGTTACAGTACATTGCGCATTAACAAATCAATGCCTATCCACTTGGGTTTGAAGACGAAGGCATACGGTCAGACCTCGAAAACAGAACCAGGCCTTAATCTGAATGAAACAGATGGACGCGTCAAGGTGCAATCGCCTTTATTTTTCTACACTGCTCTCATTTTGGTTATCGTACTCTTTTGTTTATACTTATATTATAAGAACCGCTTCTGGTTTTATCGTTCTTATGCGGTTTGCTGCACAGTACTGAGTTTGCTACTTGTATGGGTGCTCGCTCTACTTGTATTTTTCTGTATGAACTACAAGCGTTTGGTATTTCCCTCAACATCGACGAGCTTTTCACAATCACAATTCCAGCTTCCCGCTGAACGACAAAATACACGGCTTCGGTTGGAGGCCGTAATTCTGACGGGATTACCTTTCAACGGAGCAGAAATCGTTCGCGAAATGTTCACGACAAACACCGACTTTGTAATGATCGACGTGCCTTCGACAGATGTCGTTACACCTTCGGACGTCTCGGTATTGCAACAGAGCCTGGATTTCTGCGAATGGAGTAGAAACGACAGCACGTCTAATTCTCTATTCGTAGAATGGTGGGGAAATGTAACGAAAACTCCTTTACTACTTCGAAAACATAACACCAAGGAACGCATTTCTTTGACCCACCCTCTTCATTTGACTGGGAATTACGAAACTGTAATACGAAAATCTAAAGGCGCGTTTGCTGTAGTTCATTTTAAAAATCCTGGATGGCTTTTTAGAGTTTCCTGGTTGAATTCAGGCTTCCTAAGACATACCCTGACACCGGTGTTGTACGTCGTAAGGGATCCAAGAAGTTGGATTGAACACGTGCTCTCCAATGATTCTCGGAAAAACACGTTTCTTAGCAACCTCGACAGCGTCCTGAGTAAAGATCTAAGAGAACACGGCTGCGTGCTTCCCACCGAACTTTGTCTCTCGGAGCTTTGTCTCTCGGGACTTTGTCCCTCCGAGATTTCTTCCTCGGTAGTTTGTCCCTCGGGGATTCGTGGTTTCCGAGCACGCAACGGCGTTGGTTTAAAACCTCACGTTGTTTTAGCCCATATTTGGGTAGCTTTCGTCTCGTATGCGTCAAAGTTAATGGCCATCCTGCCGTCGGGTCGTTTCAGAATAGTGCGTTTAGAGAATTTGCTCGCATCACCAAAAGAAACTAGTGAAGATATTTATAGTTTCCTGAGAATGCCGTTTTCTGCAGCTGTGGAGCATAGGGTACTGCAAGTGACAAAGACCGGTATTTTTAAAATACGTAACTATGGTAAAATCCAACGACGACTGCTTTCCACTTGGGGAAAAGTTCTCACAAAACGACAAGTGTCGGAAATTGAGGAAATTTGTAGAAAGGCGATGCGCAAAATTGGCTATATTTCAAACGATGTTGGAACGCAACATGATGTTTGA

Transcript

Ppa0G201230

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0VBN2	Dermatan-sulfate epimerase-like protein OS=Mus musculus OX=10090 GN=Dsel PE=2 SV=1
Q8IZU8	Dermatan-sulfate epimerase-like protein OS=Homo sapiens OX=9606 GN=DSEL PE=1 SV=2
Q9UL01	Dermatan-sulfate epimerase OS=Homo sapiens OX=9606 GN=DSE PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002542 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07940 all species →	Hepar_II_III	Heparinase II/III-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR008929 all species →	Homologous_superfamily	Chondroitin AC/alginate lyase	Interproscan
IPR052447 all species →	Family	Dermatan-Sulfate Isomerase	Interproscan
IPR012480 all species →	Family	Heparinase II/III-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15532 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030204 all species →	Biological Process	chondroitin sulfate metabolic process	Interproscan
GO:0030205 all species →	Biological Process	dermatan sulfate metabolic process	Interproscan
GO:0047757 all species →	Molecular Function	chondroitin-glucuronate 5-epimerase activity	Interproscan
GO:0016829 all species →	Molecular Function	lyase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01794	DSE; chondroitin-glucuronate 5-epimerase	EC:5.1.3.19	Glycosaminoglycan biosynthesis - chondroitin sulfate / dermatan sulfate	ko00532	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.