Gene detail

Detailed information of Ppa0G203660 in Paragorgia papillata

Genomic Location: Contig00307:1771504...1773555
NR annotation: CAB4006995.1, PREDICTED: uncharacterized protein K02A2.6-like [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G203660

ATGACACTTAGTCGAGATAAGTGCGAATTTCGTCAAACCGAAATTACATATTTAGGAGAGACATTGACACAAACAGGCGTTAAACCTGACATTAATAAGATTAAAGCTATTCTCGACTATACTAGACCAACAAGCAAACAAGATTTACAACGACTCCTAGGCATGACAAATTTCATAGCTAAATTTTTACCAAAACTTTCTGACGTCACAGCGCCTCTACGGGAGCTTATTAAGAAGAATGTCGAATTTCATTGGCTAGACACACACGAACAGGCTTTTCTAGCGCTCAAGAATTTGCTCACACAATCGGAAACGTTGCGCTATTATAACGTTTACAAAGCCGTGACTCTACAGGTCGACGCTTCGAAAGGCGGCCTCGGAGCAGCTATAATTCAAGAGCACGGACCTGTAGCCAATGCCTCGAAAGCCATGAACGAAACGCAGTGCCGCTACGCGCAAATCGAGAAAGAACTTCTCGCGGTCGTATTTGCGTGTAAACGTTTTCACCAGTACGTGTACGGTAAACCCATAACAATCGAAAGTGACCACAAACCTCTGGAGGCAATTTTTAAGAAACCTTTATCGCAAGCACCTAGTCGGCTACAAAAAATGCTTATGCAACTACAGGCATACGACATCACTTTAGTGTATAAGAAAGGTACCGAAATGTACATCGCGGACGCATTGTCGCGCGCATATCCACCTGACATTATTGACGAACAGTTTGAACGAGACATTGCCTCAGAACGTTTTATTCATTTAATGTCCTCGGAATCCTACGTAACGGACCGCAAACTAAACGCGATCCAAGAAGAGATTAAAACCAACGAAACCATGCAACTACTCGTTCAGCAAATCCAGTCGGGCTGGCCAGAAAACAACTCATTACTACCAATACCACTTCGTCCTTACTACCCTTACCGAGACGAGCTGACTACCCAAGACAACCTGATATTCAAAGCACAGAATGTCCTGATTCCACCTAACCTTCGAGCCGACACATTACAAAAGCTCCACCAGTCCCATCAAGGCATTGAGAAAACCAAGCGATTGGCTCGAGAATGCATATTTTGGCCAGGTATGAATTCTCAAATTGAACAGCTAGTCTCAACCTGTTCAACTTGTCTGCATTATGCCAATTCCAATCAACGGGAACCACTTCAACCCCATGAGATTCCACAGCGACCCTGGCAAAAGATCGGCACTGATTTATTCGACTGGAACGGCAAACCCCATCTCATCGTTGTTGACTACTACAGCCGTTACCCCGAAGTAGCAGAGCTTCGTGACACCAAAGCAACCACCGTTGTCCGAAAAACTAAATCTTTCTTTAGTCGACACGGCCCTCAATACTCATCAGCCGAATACAAACACTTCGCCAACGAGTATAGCTTTGTGCACACGACAATTAGCCCTAGATATCCCCAGTCTGGAGGTCTTCACGAAAAGACTGTTCAAACGGTAAAGCATATCCTAGAGAAATGTCGAGTGACAAATCAAGATCCATACCTTGCTTTGTTGGACTACCGGAATACTCCAATCGACGGTGTTACCCCTGCACAAGCACTTATGAGCAGACGACTTCGATCCAGTTTCCCAATTTCCAAACAACGACTTCAACCGGAAACTATCAACCCCAACCAGTTTCAGGACACTCGCAGTCAACAGCAACAGAAGCAGAAGAAATATTTCGATAAAAATAGTAAATCGTTACCTCCGCTGAAGATAGGGGATACAGTGAGATTCAAGAAGGATCCAAAGTCACCATGGCTTCCAGCAATTGTCAAAGCCAAACATGACACACCGAGAAGCTACATTGTCGAAACAAGCAACGGCAGTCGATATCGGAGAAACAGGATTCACTTACGACAGACACAAGATCAACGACCTGATACGTCTCCTGATGCCCAACACCACATCACAAACCCACCGGAAACAAATGTACGACAACAACCAGCACCTGACTTACTTCCCGCGAATGCTCCTGCAGCACAACTAAAGACGAGTCGATATGGAAGAGTTATCAATCAAAATCCGAAATACAAGACATAA

Transcript

Ppa0G203660

Protein

Uniprot

Uniprot term	Description
Q9UR07	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1
P0CT41	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1
P0CT34	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan