Detailed information of Ppa0G204990 in Paragorgia papillata

Genomic Location: Contig00311:48840...267674
NR annotation: XP_028402738.1, LOW QUALITY PROTEIN: microtubule-actin cross-linking factor 1-like [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q91ZU6Dystonin OS=Mus musculus OX=10090 GN=Dst PE=1 SV=2
O94854Microtubule-actin cross-linking factor 1, isoforms 6/7 OS=Homo sapiens OX=9606 GN=MACF1 PE=1 SV=5
Q9UPN3Microtubule-actin cross-linking factor 1, isoforms 1/2/3/4/5 OS=Homo sapiens OX=9606 GN=MACF1 PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001024 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17902
all species →		SH3_10SH3 domainDomainInterproscan
PF00435
all species →		SpectrinSpectrin repeatDomainInterproscan
PF02187
all species →		GAS2Growth-Arrest-Specific Protein 2 DomainFamilyInterproscan
PF00307
all species →		CHCalponin homology (CH) domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001715
all species →		DomainCalponin homology domainInterproscan
IPR041615
all species →		DomainDesmoplakin, SH3 domainInterproscan
IPR036534
all species →		Homologous_superfamilyGAR domain superfamilyInterproscan
IPR011992
all species →		Homologous_superfamilyEF-hand domain pairInterproscan
IPR018159
all species →		RepeatSpectrin/alpha-actininInterproscan
IPR003108
all species →		DomainGAR domainInterproscan
IPR002017
all species →		RepeatSpectrin repeatInterproscan
IPR036872
all species →		Homologous_superfamilyCH domain superfamilyInterproscan
IPR043197
all species →		FamilyPlakinInterproscan
IPR002048
all species →		DomainEF-hand domainInterproscan
IPR001589
all species →		Conserved_siteActinin-type actin-binding domain, conserved siteInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23169
all species →		ENVOPLAKINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0008017
all species →		Molecular Functionmicrotubule bindingInterproscan
GO:0005198
all species →		Molecular Functionstructural molecule activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005882
all species →		Cellular Componentintermediate filamentInterproscan
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0042060
all species →		Biological Processwound healingInterproscan
GO:0045104
all species →		Biological Processintermediate filament cytoskeleton organizationInterproscan
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10382DST; dystonin-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP