Gene detail

Detailed information of Ppa0G206390 in Paragorgia papillata

Genomic Location: Contig00314:236576...239294
NR annotation: CAB4010263.1, sprT-like domain-containing Spartan [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A0G2L7I0	DNA-dependent metalloprotease SPRTN OS=Danio rerio OX=7955 GN=sprtn PE=3 SV=1
F6UH96	DNA-dependent metalloprotease SPRTN OS=Xenopus tropicalis OX=8364 GN=sprtn PE=2 SV=2
A0A1L8G2K9	DNA-dependent metalloprotease SPRTN OS=Xenopus laevis OX=8355 GN=sprtn PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005080 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10263 all species →	SprT-like	SprT-like family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006642 all species →	Domain	Rad18, zinc finger UBZ4-type	Interproscan
IPR006640 all species →	Domain	SprT-like	Interproscan
IPR044245 all species →	Family	SprT-like domain-containing protein Spartan	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21220 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan
GO:0003697 all species →	Molecular Function	single-stranded DNA binding	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006974 all species →	Biological Process	DNA damage response	Interproscan
GO:0031593 all species →	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24051	SPRTN; SprT-like domain-contaning protein Spartan	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.