Gene detail

Detailed information of Ppa0G206490 in Paragorgia papillata

Genomic Location: Contig00314:339643...349919
NR annotation: XP_028415774.1, alpha-actinin-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G206490

ATGGCCGATGAGGAGCAGGAGTATTATGGGTATTACTACGGAGATGATGAGGATAGAGGATTGTTAGATCCAGCTTGGGAAAAACAGCAAAAGAAAACCTTTACTGCTTGGTGTAACTCACATTTACGAAAAGTAGGCGTACAAATAGAAAGTATCACAGAGGACTTCAGGGATGGCTTAAAACTCATGATTTTACTCGAAGTCATTTCGGGAGATCGATTGCCAAAACCTGAACGAGGCAAAATGAGGGTTCATAAAATTAGTAATGTTCTCAAGGCACTGGAATTTGTTGTTACAAAAGGAGTAAAATTGGTTTCGGTCGGAGCTGAAGAAATCGTTGACGGCAATCTGAAAATGACTTTGGGTATGATATGGACGATCATTCTGCGTTTTGCAATTCAAGATATCGCTGTTGAAGAGTTGTCTTCAAAAGATGGCCTTCTTCTTTGGTGTCAGAAGAAGACAGCTCCTTATAAAAACGTCAATGTTCAGAATTTCCACAGAAGTTTTAAGGATGGTTTAGCATTTTGTGCACTAATTCACCGCCATCGGCCCGAATTATTAAACTATGCTGAGCTCAGACAGGATAATCCTGTTCATAACTTAAATCTTGCATTTGAAGTTGCTGAAAAACATCTTGACATTCCTAAAATGTTGGATGCTGAAGAGATGGCCAGCATGGAGAAGCCAGATGAACGTGCAGTTATGACTTATGTATCTTCCTATTATCACGCCTTTTCTAGTTCCCAGCAGGCTGAAACTGCATCAAAAAGAATTGGCAAAGTGTTGGATGTCAATCGTGAAAATGAAGGACGAATGGAGGAGTACGAAAAGCTTGCTAGTGATCTCCTTGAATGGATCAATCAAACAATGCCATGGCTTCAAGATCAGACTTCAGATGGAACTCTTCCTGGAGTGAAGAAAAAGTTGGAGGACTACCGTAAATACAGAGGAAATGAGAAACCACCACGTGTGGAGGAAAAAGCTAACCTTGAAACATTATTCAACACCCTGCAAACAAAACTTCGATTGAATAACCGTCCTGCTTATCTGCCAAGTGAAGGAAAAATGATAAATGATATCAATGGTGCCTGGAACAGACTGGAAGGTGCTGAAAAAGAGTTCCAAGATTGGCTTTTGCAAGAGTTACGAAGAATGGAACGGCTAGATCATTTGGCTGCCAAGTTTGACCACAAGTGTCAAATCCATGAAGCATGGACAGAAGGAAAGCCTGAACTGCTTGCACAAGATAACTACAGCGATGCTAATTTAGCAGATATCTTGGCTTTGATGAAAAAGCACGAAGCTTTTGAAAGTGACCTTGCTGCTCATCAAGACCGAGTGGAGCAAATTGCAGCCATTGCCCAGGAATTGAATTTATTACATTATAGTGATTTACCAACAGTCAATTCACGCTGCAAGTCAATTTGTGATGGTTGGGAAAACTTAGGACAGCTGGCTGTTGCCAGAAGACAAAATCTTGAGGATGCTAAAGCTCGTCGAGAACAGATAGATATGTTACGACTGGAGTTTGCAAAAAGAGCTGCACCATTCAATAACTGGATGGAAGGTGCTAAGGAGGACCTTATGGACATGTTCAGTGTTCATACAATTGATGAAATCCAGGAACTCCTAGATGCCCATGAAGCATTTAAAGCCAATATGTCTGCTGCACAAGAGGAATATGAGTCAATCTCGATGTTGGTGCAAGAGATGAATGAGTTGGGCTGCACTGATAACCCGTATACTACCCTAACTCCTGAGGATATCACTGAAGAATGGCGCGAAGTTCTTGAACTTGTGCCTCAACGAGAAGAATTGTTGAAAAAAGAATATTATAACCAAAAATTAAACGAACAATTACGAGTTGATTTTGCACAGAAAGCCAACATTGTTGGACCATGGATTCAACAACAGACCGAAAACTTACGAAACATTGGGCTGCAAAGCCACATAACGTCGGAGGAAAATCTGTCAGTTCTGCAGATGCTTGAGAAAACTGTCACTGCTTATAAAGGAAATATTGACGAACTCGAAGACATCAACCAGGGTGTCCAGCAAGCTCTTATTTTTGAAAACCCGCATACCCAATATTCCATGGAGGTGTTACGTGTTGGCTGGGAACAGTTGTTAACTGGAATTGCCAGGAACATAAATGCAGTAGAAAACCAGATTCTGACAAGAGACTCGAAAGGAATTACGGAAGCACAAATGAAAGAATTCCGAGATACGTTCAATCATTTCGACAGAGATCGTTCGATGCATTTAGAGCCTCATGAATTTAAAATGTGTCTTATAAGTTTGAACTACAACATAAAAGAAGGGGAGAAAGGTGAAGAAGAGTTCAACCGTCTTATGTCAATTGTGGATCCCAATGAAACTGGCAAAGTGTCATTCCAAGCATTTGTTGATTTCATGACACAAGAAGTTGCTGACTCCGACACCGCGGAACAAGTGATGGACTCGTTTAAGATCTTGGCTGGAGACAAGCCTTACATCACCGCTGATGAATTACGACGAGAACTGCCATCGGACCAAGCAGAATATTGTATTGCAAGAATGGCTCCATTTGAAGGCGAAGATTCAGTTGATGGTGCCTTGGATTACATGTCCTTCTCCACCGCATTGTACGGCGAAAGTGACCTCTAA

Transcript

Ppa0G206490

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
L7UZ85	Alpha-actinin OS=Dermatophagoides farinae OX=6954 PE=1 SV=1
P05094	Alpha-actinin-1 OS=Gallus gallus OX=9031 GN=ACTN1 PE=1 SV=3
Q9Z1P2	Alpha-actinin-1 OS=Rattus norvegicus OX=10116 GN=Actn1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002750 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08726 all species →	EFhand_Ca_insen	Ca2+ insensitive EF hand	Domain	Interproscan
PF00435 all species →	Spectrin	Spectrin repeat	Domain	Interproscan
PF00307 all species →	CH	Calponin homology (CH) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014837 all species →	Domain	EF-hand, Ca insensitive	Interproscan
IPR002017 all species →	Repeat	Spectrin repeat	Interproscan
IPR001589 all species →	Conserved_site	Actinin-type actin-binding domain, conserved site	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR036872 all species →	Homologous_superfamily	CH domain superfamily	Interproscan
IPR018159 all species →	Repeat	Spectrin/alpha-actinin	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR001715 all species →	Domain	Calponin homology domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11915 all species →	SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0030054 all species →	Cellular Component	cell junction	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0042995 all species →	Cellular Component	cell projection	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05699	ACTN1_4; actinin alpha 1/4	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.