Gene detail

Detailed information of Ppa0G207070 in Paragorgia papillata

Genomic Location: Contig00314:741013...751813
NR annotation: XP_046847628.1, vacuolar protein sorting-associated protein 54-like isoform X1 [Xenia sp. Carnegie-2017]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G207070

ATGCTTGAGATCGCAGACATGATGCATCAACGGACATGGTCAATGTGTTTAGTTTGTGATAACAAGTTTAGCTTTGAAACTCCACGAGAATTTGCTAAACATCTTCGTACTGAACATTGTTCCAAAGAGGGAGGTTCATTTGTTTGTCGCTATGGTAGGAATGGTGTATGTCCTTCTCTTCCTGTCGAGGGAGTGAGTGATGTTGATTATGAAGCTCATGTTGAAAAGAATCATATTGGGTCACCACTACAGACTGAAACTGTTACTCCTGGAGCAACAAGTCATCGTGAGGACAGATTGGTTGGTTATGTACATATGCCTCCTATCTCGTTCAAGGAACAAAACTGGACATTTTTCTCATCTACTCAGAACCTTGCTGCTGTTTTAAATGACCCAAGTGAAAGAAAAAGATCCACTGACTTTTTTACGAGAACATGGGGAGCAGAGTTTGAACCTTGTGAAGTTCCTCCATTAACATTACTTCAAGCTGTTCCTAAACGTTATTTTAATGATTATATTAAAAGAATTCAGTTTCGAGTGAAAGCTCACGAGAAAGTGAAAAAAAGTCTTCAGTTCAATGAAGAAACTAGTGATTTTGGTGATACAGGTTTTAGTAAAGCAGCAGCAACTGCAGCCAAACGACAAGGAGGTTATCTGAATGATCTTGACGTTATTCCTAAGATTTTTATGGGTGCTAATTTTACTCTTGAAGATCCTGAAACATTCAAATATGTTATTCCATTGACAAGAAATGATACAATTGATGGAAAACATCGTCACAAGAATGCAATAACTGTGCCAAAAAATTCTCTCAAGTTAATGCAAGAGAAGCTTACTCATTTCTTGGATATAACAGAAGTTGCATTAGCTCACCAAATCTCACTGAGATCAGAAGATTTCTTCCAAGCAGTCTCCTCACAGGACCAACTCCAAGATGACGTTGGACAAACAAATTCTGGAATAAAACATTTACGAACAAAAATCAAGCAAGTAAAAGATGTGTTGTGTGGTGGTTCTTTGAAATTCATGCAGCTTATGCAGTTACGATCAAGATACCATTCTGTTTATGACAAATTAAAACTAATGTCTGCTGTTCAACAAACACAACCCACAATTCAACTGCTGTTATCTACTGGTGATTTCGTTGCTGCATTAGATCTAATTTCTACAACACAAGAAGTTCTTCAGCTTGAACTTGGTGGCGTCCAAAGCTTGAGGCATCTGGGTTCACAGCTGGCTGAATTGGAGAGGGTTATTGAAAGAATGATGGAGGCAGATTTTATTGAGTTTGCAACAACCAATCTTGCTAAACCTCTTGAAGATTACAATGATCAGAATCATGTCATTGATGAGGAACGCTTGGTCTCTGTGTTGTTTGGCTTACTTAGAAAACAGAAGTTTCACTTCATTCATTCTTACAAAGAGGAAGCATTTGCAACAATCAAAGAAACTGTGAAGGAAACAGCACGAAATTTTGTATCGCAAACTGCCATCAGCGAAAACAGTCAAGGTCTGCGTGATGCGATGCAAGGTCTTAATTTCCAAGGCTGGCTGGACATGCTGCAAGTTGTTTTTACCAACGTCTTACAGACACTGAAACGAATGAAGATACTCCACCAAAGTTTTGTCAGTGTTCTTGCAATAGCTGCAGATCAAGATAACACCATATCACCTTCGTTGGAGCAGTCGTCTGCCGACAGCGATATTCTTATTAACGCTGTTCAATGTGGGAAATTGACTAATGAAAGCAAAGAAATTCTTGGTGGGGCTGGAGAATTAGCTCAGGCGCGTTGTGTTAAGCTGATTAATGTAAGAGCCAAGGCTGGTTATTTGGATGCTCTGGCCTCAACAGAATTTGTTTCACTCTCGAGATCTGTTGAGAAATTTGTGAGTGATTGTGAGGAACTTTGTGGTCGCCAAAGCCACGGCTTGCGGACTGTCTTGGTGACACAAGCTAAGAAATTTGTTGAACGTTTTCACGAAGAAAAGAAACAAAAATTAAGTTTAATTTTGGATAATGAAAGATGGAAACAAGCTGATGTGCCTGCAGAATTTCAAAATCTTGTGGATTCTTTAGTTGACGGAGTTCCAACAAGTGATCGTGAGATACCATCATTTTCTAAGCGAGCCTCTCCTGCGTCATCAGTTCAAAAACCAAGCAGTCATCTTGTTGTAAATGGAGAAAAATTTGCCGTTGCAGGGACGTTACTTCTCGTATTAAAAATGATCGTGGAATATTGTCAATGTGTCGATCTCATGCCAATGTTGACCACTGATATTATGACAAAACTTTTTGAGCTCATGAAGCTCTTCAATTCTAGGACTTGTCAGTTAGTTCTTGGTGCTGGCGCTCTTCAGCTTGTTGGTTTGAAAACAATAACTGCAAAACATCTAGCTTTAGCGTCTCGCTGCTTGGAAGTTGTCACTTTACATATTTCAACATTTAAAGCTCATTTTGAACTGCGTCTTCCTCCTAAGCAATATGTTCTATTATGTCAATTCGATCAGATTTTAAAGGATTACAACAATCATCGTCAAGAAATTTTTAGCAAAATGGTTACTTTAATGGAGGAGCTTTTTATCGGTCAATTATCAACGTGGGAAGTTCGACCACCGATGCCATCTCAAATTATGAGAAGTATTGTTAAACAGATAATAAAACTACACGAAGCATTGTTAGCCATATTTCCCGCCAATCAAGTTGAGTTCGTCTTAAAGGACGTTAAAAAGTCTTTCAAGAAAGTTTTGGCGAAGAAAATCGCGAGTTTAGGAGTAAAGAATGATTTTGGTCCTCAACACGGCTTGGTGCAATCTGACTTGGCTTTCTTTACAATGAATTTGAGGAAATTAAATGGAATGAAGGATGTAGAAGAAACTTTAAGTGATATATGGAAACTTGCAAATGAATTAAAAACATCTAGATCGTCACCAAATATGAGTAAAAAAGCTCTTCCAAACAGATAA

Transcript

Ppa0G207070

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9P1Q0	Vacuolar protein sorting-associated protein 54 OS=Homo sapiens OX=9606 GN=VPS54 PE=1 SV=2
Q5SPW0	Vacuolar protein sorting-associated protein 54 OS=Mus musculus OX=10090 GN=Vps54 PE=1 SV=1
Q9JMK8	Vacuolar protein sorting-associated protein 54 OS=Rattus norvegicus OX=10116 GN=Vps54 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004663 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10475 all species →	Vps54_N	Vacuolar-sorting protein 54, of GARP complex	Repeat	Interproscan
PF07928 all species →	Vps54	Vps54-like protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019515 all species →	Domain	Vacuolar protein sorting-associated protein 54, N-terminal	Interproscan
IPR012501 all species →	Domain	Vacuolar protein sorting-associated protein 54, C-terminal	Interproscan
IPR039745 all species →	Family	Vacuolar protein sorting-associated protein 54	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12965 all species →	VACUOLAR PROTEIN SORTING 54	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan
GO:0000938 all species →	Cellular Component	GARP complex	Interproscan
GO:0006896 all species →	Biological Process	Golgi to vacuole transport	Interproscan
GO:0019905 all species →	Molecular Function	syntaxin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17600	VPS54; vacuolar protein sorting-associated protein 54	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.