Genomic Location: Contig00314:850733...852091
NR annotation: CAB4002598.1, UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families
| CDS |
| Ppa0G207160 |
| Transcript |
| Ppa0G207160 |
| Protein |
| Ppa0G207160 |
| UniProt accession | Description |
|---|---|
| Q0BTB8 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) OX=391165 GN=murA PE=3 SV=1 |
| Q1H4S0 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Methylobacillus flagellatus (strain ATCC 51484 / DSM 6875 / VKM B-1610 / KT) OX=265072 GN=murA PE=3 SV=1 |
| A8LS12 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase OS=Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12) OX=398580 GN=murA PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0010444 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00275 all species → | EPSP_synthase | EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036968 all species → | Homologous_superfamily | Enolpyruvate transferase domain superfamily | Interproscan |
| IPR005750 all species → | Family | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | Interproscan |
| IPR013792 all species → | Homologous_superfamily | RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | Interproscan |
| IPR001986 all species → | Domain | Enolpyruvate transferase domain | Interproscan |
| IPR050068 all species → | Family | UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA subfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43783 all species → | UDP-N-ACETYLGLUCOSAMINE 1-CARBOXYVINYLTRANSFERASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016765 all species → | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups | Interproscan |
| GO:0008760 all species → | Molecular Function | UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity | Interproscan |
| GO:0019277 all species → | Biological Process | UDP-N-acetylgalactosamine biosynthetic process | Interproscan |
| GO:0003824 all species → | Molecular Function | catalytic activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00790 | murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase | EC:2.5.1.7 | Peptidoglycan biosynthesis and degradation proteins | ko01011 | deepkoala |
Genes whose expression across the transcriptome samples of Paragorgia papillata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Paragorgia papillata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
