Gene detail

Detailed information of Ppa0G207640 in Paragorgia papillata

Genomic Location: Contig00314:1217840...1230844
NR annotation: CAB3979027.1, crossover junction endonuclease MUS81 isoform X1 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G207640

ATGGATGGACAAACAAGAAAGCTTTCTAAACAGAAGAGAAAATTACCAAAAAGCTGTCCTAATCCACTGTTTCTCAAATGGTTAGAAGAGTGGAGAGATGATGCGATAAGTAAAGAGTCAAAGCTACAATACGTTTATTCAAAAGCTATAAGTTCTTTAAAGAAGTACCCACTGCCTTTGGAAAGTGGAAGTGAAGCAACATTGCTCGATGGTGTAGGGCCAGGGATTGCAAAACGACTGGACGAGGAGCTGGCAAGACACAGAAGAAACCTGACTAACAACCCAAATGTTGTGTACGATGTGGGGGAAACTCCAATTGGTGAATCTAATTTCTTGGAATTACAAGTTCCTCCTCCACCAACCATGATGTCAGTTGGCACACCACCAATTAGTACATGTTCTACTAGCAGCACAGAAAATGTTTCCCAACCAAAACCTAAAAAAAAAAGGAAGTCAAGCCCAAGGGAATATGTCCCAGCTTATAGGAGTGGACCCTATGCCATAATGATTGCTCTCTTGAAAGCCAGTGAGAGGAATGGCTACAAGGGTTATATGACAAAAGCTGAATTACAACAGCAAGCTCAACCTTTTACAGAAACTTCATTGACAGTGCCAGATCCAGGTTCATATTACACAGCGTGGTCATCAATGTCAACTTTGATTAAGAAAGGATTAGTTGTGAGAAGTAACCATCCTCCTAGATTTCATCTGTCAGATTCAGGACATATACTGGCATACAAATTACAAACAGCAACTGGAAATGAAAATGCAGCATTTGGATCCCCAACTTTTGAAGGCCAATCCCCTTCTTATGAAGGGCTATCTCCAAGTACTTCCAGGACATTTAGCAGTCCTGTTTCACCATCTTTAACAACAACAACAATGACAACAACAACAACAAAGATAAGTAATAAATTAGATAAAGAAAAGGCCATTCCTAAGAAAACAACAGCTAAGTCAAGGAAGCCAGCAGCAACCCAACCACAAACTGCTACTACAACCAATACAATACCCTTGCCAGAGACTACAACAAGTAAGCCTTACAGTAAACCTACAAAAGATTTTTTGGCATCATACAGATACAAGACTTCAGGAACAGAAGTAATTTCTAATCAGTGTGGTTCTCTTAAGTACTGGTATGTCAACAGTGATGGTGAGTGTGTTGAGAAGGAAGACAATGCTGCTGTTATCATTGATGATGAAATCTCATTTGGCTACTTAATTAAGTGCAAACTTTGTGACTTGGAAGTGTCAGGATTGCAATACAAACTAGATCATTCCAGATCAAGTCAAGATGGGTATGTGTTTGCATTCTTGGATAGTAATTGCATCACACAACACAATATTACAGTTGAAAACACTCTTGCAACAAAGAAATCAAGAGATGACATTGATGATGAAGAGATGCTTACAAGACCTCTGTTTGAAAGACTTGAAGGACATATTAAAGACCCAGACCTTTGTATAAGTACTATTAGCAATAAAAAAACTGAAGAAAAGAAACGTCTTGAAAACAACAGTGTTTCTAAACCAACTGAAAGTTTACCACATGCACCAAAAAGAACAGTAACACCACAATTTGAATTGAAACCAGGTTCATTTGAAATTATCTTGTGTGTTGACTTTACTGAAGCAACTGGAGGGGCAAAAACAAGTCGAAAAGAGGAGATGGTTAAAGAACTCAGAATGAATGGTGTTCAGTTTGATGTGAGGAAACTTAATGTGGGAGATTTTCTGTGGATTGCCAAGGAAAAGATGTTACCTGTCCCAGGTCAGCTTGTGCTTCCAGAGCAGCGAGAACTGGTCCTGGATTACATTGTTGAAAGAAAACGAATGGATGATTTGTGTAGCAGCATAAAAGATGGAAGATTTAAGGAACAGAAGTTTCGTTTATTGAACTCTGGGCTGAGGCACCCGGTGTACCTTGTGGAAGATTTTGGATCACCAAACTTTTTGTCAATGCCAATGCAAACCTTGGAACAAGCGATTGTCAATACTCAGGTTGGGCAAGAATTTTTTGTGAAAAGAACACGTGATATTAAAGAATCTGCTGCATACCTCACTTTAATGACAAGATATCTACAGACTGTGTACAGTAACAAAATTCTAAAAGCTATCAAGAAAGAAGACATGGAGTTTGTTGGTGTTGATGAAAACCAGCTCAACACATTTCTTATGACTTTTCAAGAGCTGAGTGACATATCTTTGAAGAATAGGGTTTTAACAGTTGGGGAGGTTTTTGGAAAACAGTTGTTACAAATTCCTGGGGTTGCTGTGGAAAAAGCTGTGAGCATTTTAGAAACTTACCCAACTTTAAGACATCTTTTAGATGACTATGAAGAACAAACAACAGAGAAAGAAAAAGAAAGTCTTCTTTCAGGGTTAAAATACAGCAAAAGTGAAAGGGGTGAAAGCTTGAATGTCGTGTTTGTCAATGGCGACGAAAGTGTTGATGAAGTGAAGCAACAGATCGCTGATTTGGAAGGCATTTCTGTCGAGGACCAAGTTCTTTTCTTCGGTGGTAAGCCGTTGGAAGGATGCAGTACGTTGGCTGATAATGGGATCCAGGATTCATGTACTTTGGATGTTCTTGGCCGAGTGCTTGGAGGTAAGGTTCATGGATCTTTGGCTCGTGCTGGTAAAGTGAAAGGCCAGACACCAAAGGTTGACAAGCAAGAGAAAAAGAAGAAAAGGACTGGTCGAGCTAAGCGTCGCATGCAATACAACAGACGTTTTGTCAATGTTGTTCAAACATTCGGCAAGAGGAAGGGACCAAACTCCAATGCTCCATAA

Transcript

Ppa0G207640

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q640B4	Structure-specific endonuclease subunit MUS81 OS=Xenopus tropicalis OX=8364 GN=mus81 PE=2 SV=1
Q7SXA9	Structure-specific endonuclease subunit MUS81 OS=Danio rerio OX=7955 GN=mus81 PE=1 SV=1
Q96NY9	Structure-specific endonuclease subunit MUS81 OS=Homo sapiens OX=9606 GN=MUS81 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003681 (this species only)
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21136 all species →	MUS81-like_WH	Crossover junction endonuclease MUS81-like, winged helix domain	Domain	Interproscan
PF02732 all species →	ERCC4	ERCC4 domain	Domain	Interproscan
PF21292 all species →	EME1-MUS81_C	EME1/MUS81, C-terminal	Domain	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan
PF04758 all species →	Ribosomal_S30	Ribosomal protein S30	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR047417 all species →	Domain	MUS81, winged helix domain	Interproscan
IPR006166 all species →	Domain	ERCC4 domain	Interproscan
IPR011335 all species →	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR047416 all species →	Domain	MUS81, XPF-like nuclease domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR027421 all species →	Homologous_superfamily	DNA polymerase lambda lyase domain superfamily	Interproscan
IPR042530 all species →	Homologous_superfamily	EME1/EME2, C-terminal domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR033309 all species →	Family	Crossover junction endonuclease Mus81	Interproscan
IPR006846 all species →	Family	Small ribosomal subunit protein eS30	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13451 all species →	CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0004518 all species →	Molecular Function	nuclease activity	Interproscan
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0000727 all species →	Biological Process	double-strand break repair via break-induced replication	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006302 all species →	Biological Process	double-strand break repair	Interproscan
GO:0006308 all species →	Biological Process	DNA catabolic process	Interproscan
GO:0008821 all species →	Molecular Function	crossover junction DNA endonuclease activity	Interproscan
GO:0031573 all species →	Biological Process	mitotic intra-S DNA damage checkpoint signaling	Interproscan
GO:0048257 all species →	Molecular Function	3'-flap endonuclease activity	Interproscan
GO:0048476 all species →	Cellular Component	Holliday junction resolvase complex	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G207640.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.