Detailed information of Ppa0G208720 in Paragorgia papillata

Genomic Location: Contig00314:2434636...2456126
NR annotation: CAB3981468.1, Fanconi anemia group M -like [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8IYD8Fanconi anemia group M protein OS=Homo sapiens OX=9606 GN=FANCM PE=1 SV=2
Q8BGE5Fanconi anemia group M protein homolog OS=Mus musculus OX=10090 GN=Fancm PE=1 SV=3
A0A1D5PRR9Fanconi anemia group M protein OS=Gallus gallus OX=9031 GN=FANCM PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003347 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00271
all species →
Helicase_CHelicase conserved C-terminal domainDomainInterproscan
PF02732
all species →
ERCC4ERCC4 domainDomainInterproscan
PF16783
all species →
FANCM-MHF_bdFANCM to MHF binding domainDomainInterproscan
PF04851
all species →
ResIIIType III restriction enzyme, res subunitFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001650
all species →
DomainHelicase, C-terminal domain-likeInterproscan
IPR006166
all species →
DomainERCC4 domainInterproscan
IPR014001
all species →
DomainHelicase superfamily 1/2, ATP-binding domainInterproscan
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR047418
all species →
DomainFanconi anemia group M protein, XPF-like nuclease domainInterproscan
IPR039686
all species →
DomainFANCM/Mph1-like, insert domainInterproscan
IPR031879
all species →
DomainFanconi anemia group M protein, MHF binding domainInterproscan
IPR010994
all species →
Homologous_superfamilyRuvA domain 2-likeInterproscan
IPR044749
all species →
DomainFANCM, DEAH-box helicase domainInterproscan
IPR006935
all species →
DomainHelicase/UvrB, N-terminalInterproscan
IPR011335
all species →
Homologous_superfamilyRestriction endonuclease type II-likeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR14025
all species →
FANCONI ANEMIA GROUP M FANCM FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →
Molecular FunctionDNA bindingInterproscan
GO:0004518
all species →
Molecular Functionnuclease activityInterproscan
GO:0006281
all species →
Biological ProcessDNA repairInterproscan
GO:0043138
all species →
Molecular Function3'-5' DNA helicase activityInterproscan
GO:0005524
all species →
Molecular FunctionATP bindingInterproscan
GO:0000400
all species →
Molecular Functionfour-way junction DNA bindingInterproscan
GO:0009378
all species →
Molecular Functionfour-way junction helicase activityInterproscan
GO:0036297
all species →
Biological Processinterstrand cross-link repairInterproscan
GO:0045003
all species →
Biological Processdouble-strand break repair via synthesis-dependent strand annealingInterproscan
GO:0016787
all species →
Molecular Functionhydrolase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10896FANCM; fanconi anemia group M protein-DNA repair and recombination proteinsko03400deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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