Gene detail

Detailed information of Ppa0G208840 in Paragorgia papillata

Genomic Location: Contig00314:2528844...2559127
NR annotation: CAB3992025.1, exportin-1 isoform X1 [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G208840

ATGCCTGTTGCAATGACCAGTGTTGAGCAAGCGACCACCTTATTGGATTTTAACCAGAAACTTGACATTAGTCTCTTAGACAATGTTGTCGCGTGCTTCTATAGCAGCGACGGTGCCGAGCAAAAAGCAGCCGATCAAGTGCTAACCCAGTTGAAGCAGCACCCAGATTCGTGGACAAGAGTAGACAGCATTCTCGAGTTTTCGAAAAGTTTACAAACTAAGTATTTTGCTTTGCAAGTTTTGGAAACAGTGATTAAAACTCGATGGAAAGTTTTACCCCGAGAGCAATGCGATGGAATCAAGAAATATATTGTTGGCTTGATAATAAAGAATTCTATGACTGCTGACAATGAAATAGAGAAGGATAAATCATATATAGGGAAGTTAAACATGATTTTAGTTGAGATCTTAAAACATGAGTGGCCAAAAAAATGGCCTACTTTTATTAGTGACATTGTTGGAGCAAGCAAAGCTAATGAAACAATTTGTGAAAATAACATGAAAATTTTAAAACTGCTAAGTGAAGAAGTGTTTGATTTTTCAAGTGGACAGCTAACACAGACAAAGGCAAAACATCTCAAGGACTCCATGTGCAGCGAGTTCTCACAAATTTTTACATTATGTCAGTTTGTGATGGAAAATTCTCAAAATGTGCCATTAGTTGATGCGACATTGCAGACTTTGTTAAAATTTCTTAACTGGATTCCTCTTGGATACATCTTTGAGACCAAATTAGTGAGCACTTTAATATACAAGTTCTTAAATGTACCAATGTTCAGGAATGTCACACTGAAGTGCTTAACTGAAATAGCTGCAATAAATGCCACTCAGTATAATGAGCAGTTTACTCAACTATACACATTAACCATGACTCAACTAAAACAGATGCTGCCTTTGACAACCAACATCAAGGAAGCTTACAATAATGGCAGGGATGATGAACAGAAGTTTATTCAAAATTTGAGTTTATTTCTTTGTTCTTTTCTGAAGGAACATGGTCAGCTAATAGAAGCAAAGGTTGATCTTCACACAACATTACTTGAGTCGCTGCATTACTTGGTGCTGATATCTGAAGTGGATGAAATTGAAATCTTCAAGATTTGCTTGGAATATTGGAACAATCTTGCAGGAGATCTTTACAGAGAAAGTCCTTTTTCTTCATCAACAAGTCCACTCTTAATTGGCTCAATACAACAGCAACATATTCCACCAAGAAGACAGATTTACTTACAAGTTCTCTCAAAGGTTCGCATTACCATGATATCAAGAATGGCCAAGCCAGAGGAGGTTCTTGTGGTCGAAAATGATCAGGGGGAGGTTGTAAGAGAGTTTTTAAAAGATACAGATGCTATAAATTTATACAAAAATATGAGAGAAACATTAGTATATCTGACACATTTGGATTACCAAGACACAGAAATTCACATGACAGAAAAACTTCAAGCTCAAGTCGATGGGTCTGAGTGGTCATGGAAAAACTTGAATACGTTGTGCTGGGCAATTGGGTCAATTAGTGGAGCCATGCATGAAGAAGATGAGAAACGCTTCTTGGTGACGGTTATTAAGGATTTGCTCGGGTTGTGTGAAATCAAGCGAGGAAAAGACAATAAAGCTATTATTGCATCAAATATTATGTACATTGTTGGACAGTACCCCAGGTTTCTAAGGGCACACTGGAAGTTTTTGAAAACCGTTGTAAATAAACTTTTTGAATTTATGCACGAAACGCATGATGGTGTTCAAGATATGGCATGCGACACCTTCATCAAGATCGCACAAAAGTGTCGAAGACATTTTGTACAGGTTCAAGTTGGCGAAGTGATGCCTTTTATAGAGGAAATTTTAAATACTATCCAAACGATAATATGTGATTTACAGCCACAACAGATTCACACGTTTTATGAAGCTGTTGGATACATGATAAGTGCCCAGTCGGATTCGGTTGTGCAAGAAAGGTTGATTGAAAAATACATGTCCTTACCAAATCATGTATGGGACAACATCATTAAAGATGCTACGAAGAATGTCGATACATTGAAAAACATGGAAATCGTAAAACAACTGAGTAATATCTTGAAAACGAATGTCCACGGCTGCAAATCGATCGGTCATCCATTTGTCACTCAGCTCGGTCGGATATATTTGGACATGTTAAACGTCTATCGTTGTCTGAGTGAGAACATTTCTTCTGCCGTCGCGGCAAACGGACCTGTTGTCACGAAACAACCGCTGATTCGAGCCATGAGGGGCGCGAAGACGGAGACCCTAAGACTGATTTCGACGTGGGTGAGTAAGTCGAACGACGCGAAACTTGTGTGTGATAACTTTATTCCTCCATTGCTGGAAGCTGTGTTAGGAGATTATCAGAGGAACCTTCCTGCCGCGAGAGAACCTGAAGTGTTGAATACCATGGCAGCACTCACGAATAAACTGGGGCATTTCGTTACGGATAACGTACCACAAATTCTGGATGCCGTCTTTGGGTGCACGCTGGAAATGATCAATAAGGACATGGAGGAATGGCCGGAGCATAGGACTAATTTCTTTTTGCTTCTTCAAGCCGTAGTGGAACATTGTTTTTCTGCACTTTTAAAAATACCAGCCGAGCAGTTTAAACTGGTCTTGGATTCTATCGTATGGGCTTTTAAACATACAATGCGTAATGTTGCTGACACGGGTTTGGAAATTCTGTACTCGTTGCTGAGAAATGTCGAGAAATCGGAGACCTCGTCCCAGACCTTCTACCAGACATACTACACTATGATCTTGCAACATATTTTCTCAGTTGTAACCGACACGTCACATACTGCAGGGCTCAATCATCATGCCACCATTTTGTCGCACATGTTTCATTTACTGGAATCAGGAAAAGTCGTCGCCCCTCTTTACGATCCTGCTCAGTGTCCCGGCATTACCACCAATCAGGCCTATGTTAACCAATACGTGGGCAACCTTTTGAAGCAAGCGTTTCCTCACTTACAAGCAGAACAAATTAGGGTATTGGTTGAAGGCTTCTTTACACTGAATCAAGACATACCGGCATTCAAAGAACATCTAAGAGATTTCCTTGTCCAAATTAAGGAATTCCGTTCCGAAGATATCAGTGATTTATTCCTCGTCGAAAGAGAGACTGACTTGAAAAAAGCGCAGGATGAAAAACGCAAAATGCAACTCACAGTTCCGGGAATCATCAATCCGCACGACTTGCCCGAAGAGATGCAAGATTAG

Transcript

Ppa0G208840

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80U96	Exportin-1 OS=Rattus norvegicus OX=10116 GN=Xpo1 PE=1 SV=1
Q6P5F9	Exportin-1 OS=Mus musculus OX=10090 GN=Xpo1 PE=1 SV=1
O14980	Exportin-1 OS=Homo sapiens OX=9606 GN=XPO1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004325 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18784 all species →	CRM1_repeat_2	CRM1 / Exportin repeat 2	Repeat	Interproscan
PF03810 all species →	IBN_N	Importin-beta N-terminal domain	Repeat	Interproscan
PF08389 all species →	Xpo1	Exportin 1-like protein	Repeat	Interproscan
PF18787 all species →	CRM1_repeat_3	CRM1 / Exportin repeat 3	Repeat	Interproscan
PF08767 all species →	CRM1_C	CRM1 C terminal	Repeat	Interproscan
PF18777 all species →	CRM1_repeat	Chromosome region maintenance or exportin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001494 all species →	Domain	Importin-beta, N-terminal domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR041235 all species →	Repeat	Exportin-1, repeat 2	Interproscan
IPR045065 all species →	Family	Exportin-1/5	Interproscan
IPR013598 all species →	Domain	Exportin-1/Importin-beta-like	Interproscan
IPR040485 all species →	Repeat	Exportin-1, repeat 3	Interproscan
IPR014877 all species →	Domain	Exportin-1, C-terminal	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR041123 all species →	Repeat	Chromosome region maintenance repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11223 all species →	EXPORTIN 1/5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan
GO:0000055 all species →	Biological Process	ribosomal large subunit export from nucleus	Interproscan
GO:0000056 all species →	Biological Process	ribosomal small subunit export from nucleus	Interproscan
GO:0005049 all species →	Molecular Function	nuclear export signal receptor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006611 all species →	Biological Process	protein export from nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14290	XPO1, CRM1; exportin-1	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.