Gene detail

Detailed information of Ppa0G212890 in Paragorgia papillata

Genomic Location: Contig00316:2706158...2736114
NR annotation: CAB4011346.1, Hypothetical predicted protein, partial [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G212890

ATGAATAGTGATAGTTTTGGCTTGCAAGAAAAGTACCAAAAGCTGGCAACTGAATTTGCAAAAAATAAAGTTATAAAAGGCCGTCTAGGGGGAAGTTGGGGGGGGGGGGAGCACAGGGGGAATGAACGACTTAAACATCGTGAACAAACAATCAGAAAGTATGAGCAAGAGTTGGATAGTTTGCAATTTAGAAATGATCAGTTGTCAAAGCGTGTGGGGATTCTTCAGGAAGAACTCGACCAAGCTCCCCCTTCAAGTAAAAATAAATCTGTCAAGCCATCAAATACGAACCCATTTGAACAAAATGTGGCAGCTGAAGAACTAGAGATGAAGATTGAAGAGAATGTTAGACTTCAACGAGAGCTTTTTGAAGTCAACCAGAAGCATCGAGCAACTGTCTTGAATCTTCAGGAAAAACTGGAATCATTTGAAAAGAATTCAACAAGTCACCAAAGAATTATTGATGAGAGTAACGAAAAGCATAAGATTACCATTCAAAAACTTCAAGAAGAAAAAGCAATGCTTGAGGCAAGATTGCAAAAATGTGTTGAAGATCTGAAGACTGTTTCTATTAAAGCAGAAAAAAGTGAACAACAAGCACACGTATTTAACAAGAAACTTGCTTCAAAATATGAAATCGCTTCCAACATTGTTTCCGAGAAAATTCTTTTTAATGATACCAGTTTAAAAGACTTAAATAAACTGAACATCCCTCCACATGACTGCAAACGACAGATTAAAATTAAAAAACTTGTGAGTGAAGCGTTAGAAATTTTACGAATCTTTGGTGCAGGACTTTCAGATTACCACACTTACATGGAACAGAGAATTGCAATATTATTTGATGAACCAACAGATATTAGTCGAAAGCTTTGTGAACATCTTCACCAGAATGCCACTATTTTACGAAATGTGGAGCAGACTTTTAACAACTTTAGCTGCCAAGTAACGAGAGATGTTTTACTCACATTGGAAACGGCCAGTGGCTTTCAGGAATTTTCAGACTCTTTTCATCAATATTCAAATTATTTACAAAAATTATTACCGTATCAAACACTCAGCACCAAAGAGGAATGTTCGAAATCTACTTATTCTTCTTCAATGGAGAAGCTTAGTTTATCGATGCTTGGTGCGTTTGCTAAGTTTGTTTCAGTCATAAGTGAGTTGGATACTTACTTTAGACTTCTAGCATCCGCAGGATGTGGTGGCTTGCCCAGTTTCAATTCTGGTAAATGTTTTTCTTTGCTTGACACAACTGCAGCGAAATTTCATAATGTAGTAAGAGGTTTATCGACGGCGTTTCATTTGAAGAAAATGGTCGAACATCAGAATCCCACCGTCACGCAGACTCTGAAAAGTACGGATGAATGCCTTGAAACCTGCCTAGCTTCATTGGTTACGTCTTCCGCAAAAATTTCCAATTTTCTTCATTCGAACGTCGAGTTTTTCTCCTCGAGATCTGGTTACAGAGTGAGAGGGGTCGTCTCAGAAGAGAATGTTGGTTCGCTTATTCTAAAAAGTTTCAAGCAACAGAGTAGAGAGTATATTAAGAAATTAGCAAAGCCTCAACCAGAATCAATTCCTTACAAACTGACTTTAGACAATTACAAAACGTTGCTTAGTTCAACTGAAAGCAGAGAAACGTTAACCAAGCAGTACATCGTTTATGCATTCATTCTGGGTTGTTTTTTTCTGTTTCTCCAGGATAAAGAACATTGGTTACTGGAAGCGCAGCTTTTGCAAATAAAATATGAGAAAGAACACAAGAAAGCTGCTTATTTACAAGAAGAATTAGAAAACTACCAGGCGAACAGAGGACGCAGAATGGAGACACAGGCTAGGTTTTTCGTTACTAAAAGTGTTCGAAACACTACCCACACAGCACTCCACTTTTTTACACTTGAGGTCATTAAAGTGCCCCTAACATCGACAGACGTTTTACTTAACAAATATAATAGTTACCAAATCCAGCTTGATATGATGAGTGATCATTTGTGTGGCATGTCAGAGAAACTCACTTCTCAAAAAGACGAAATCGATGCCTTAAAAACAGGAAAAGGAAAGAAAGGGAAGAACTGGTTTCAATCGTTAAAAGATAAAGGAGGCTCGGAAGACATTTCATATATAGCCCAACGTTCAGCGTTAAGTATTTCTGCTCATAACTCAGAAAAACTACAACAACAAGGAAACGAAAAACTGCAAAAATGTTACTCTATAATTTTAAGTGTTCTTTCAAATAAGACAAATTTAATTTTCGCTTCATATAGGCACTTTAAATCCTTAACAACGTACAAACATTTGTTTGGAAAAAAAGTCTATCAACGGACGTCAAGGCCAACGGAAATTTTGATTGCAGTTTTTTGTATGCTTACTGACAGAATTAAAAGTAGTTTCTATTGA

Transcript

Ppa0G212890

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6IR70	Protein phosphatase 1 regulatory subunit 21 OS=Xenopus laevis OX=8355 GN=ppp1r21 PE=2 SV=1
Q6ZMI0	Protein phosphatase 1 regulatory subunit 21 OS=Homo sapiens OX=9606 GN=PPP1R21 PE=1 SV=1
Q3TDD9	Protein phosphatase 1 regulatory subunit 21 OS=Mus musculus OX=10090 GN=Ppp1r21 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005706 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21636 all species →	PPP1R21_C	Protein phosphatase 1 regulatory subunit 21, C-terminal	Coiled-coil	Interproscan
PF10205 all species →	KLRAQ	Predicted coiled-coil domain-containing protein	Coiled-coil	Interproscan
PF10212 all species →	PPP1R21_helical	Protein phosphatase 1 regulatory subunit 21, six-helix bundle	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049372 all species →	Domain	Protein phosphatase 1 regulatory subunit 21, C-terminal	Interproscan
IPR040024 all species →	Family	Protein phosphatase 1 regulatory subunit 21	Interproscan
IPR019343 all species →	Domain	Protein phosphatase 1 regulatory subunit 21, N-terminal	Interproscan
IPR019348 all species →	Domain	Protein phosphatase 1 regulatory subunit 21, six-helix bundle	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21448 all species →	SMOOTH MUSCLE MYOSIN HEAVY CHAIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005769 all species →	Cellular Component	early endosome	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G212890.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.