Gene detail

Detailed information of Ppa0G213600 in Paragorgia papillata

Genomic Location: Contig00318:278263...298113
NR annotation: XP_028397342.1, protein PAT1 homolog 1-like isoform X1 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G213600

ATGGTGGACCCTGGGTCCTCAGGTCATCTACTAAACCCACAAGAACTCGTGGCGAATAATGACGAAAAATCCAACACACTTTTCCCCATGGAAGAATGCAATAATCTTGACTCTCTCAACGACCAAACGTTTGGCGCTGGTTCATTCGATACTGCATGGGAAGGTGGTGAGATGCCAGACCTGAAGGCTGATAGCTTTGATAAGTGGAAGGAAGAGCAAAAAGCATGCCTAGGAAAGAACATTCCATTAGATGAAGCCCCAGCAAGAAATAGACAACAAGACGAGGAGAAAATGGCTCATGCTATTTCCAAACTAAGCAACCTTGACATCATGTCTCCAAAGAAGGATTCTGATGATTTTTTACCAAATGCTGATAGCATTGAAGCACTGTGGCCAACATCACCAAAGCACAGCAGTAACGTAGCAACACCTGATTCACCATACCTACCTGATATACTTTCTCCAACTCATAATATTTGGGGTTCTCCTTCAAGCGAAGAACGAAAGACTGTTAGTGAAGTTGATGATCCTGAGCCAAGCAAAGATTTTCACTTTGGAAAACATGAAGAGAATAGAGAGATGTGTTCTCCTGTTCTCGAGATTCCTTTCCCAGTCCGTCCCAGTCCTTACGGTATGTACCAAGTTCCTCCCAACATGCAGCCCAACATGAACCAAGCTCAAGCCCACGCTTATTACGCAGCTATGATGAAGCAAAGAATGCCGTACGCATCACCGTACTGTCGTACCCCTCCCCCACCTTCCTTGCAGCCATTTCCTCGACCTTTCTATCATTCTGATCCAGCTCATCTAAGACATCGTCATCCAAATATGGGCATTCCTCGTCACCATGCTCGCTTCATTACTCCTCCACCCAGGAACTGGAACCCTGGAACTGCTCGTGGAGGTCGTAACTATGACAACAGATGGCGTCCGGCGAATTTCTCTGAACCGCCAAATTTCAAATACAGACCCCAGTATTATGTGGAGAGTGGGGAGGAAGAAGAAGAGGAAGAGGGAGCCTTGATGACAGCCAAGGAAAAAGATTGGTTGATCAGAATTCAGCTGATGCAGTTGACGACTGATAAACCTGAACTGGACGATTATTATTTTCATACATTTGAAAGACGTCGCCTGGCCAAAGAGAGGGCCATGAGTCAGACTGGAGTAGAACAAGAGAGATCACATATGGACAAAAACACAGAAATGAGTCTCCCTCGTGTGGAGAAAGGAGAATACAGCTATCGACCAGCAAAATTTGAAGGATCTTTAGGCCAAGTTTCCGTTGGTTCCGTCTACCATCCTCGCCAGGTGGTTCAAATTGGCGACTCAGGAAAACCTAGAGGCCTTGTTGGCTCCTTGAAAGAAACCAAGAAGAAATATCAATTATTGCTAACTATTGAAAAGGGCTTTGATCAAATACTTCCCATTGAAGATCTGGAACGCATGGCCTTGAAAATGCCACGGGATAATAAAATACTAAAGACTCGTCGTCAGGCTTCAAAATATGATGACGACATACTCTTACAAATGCTCTCTGTCAGAAAGGGAAGGCGGTTGTTAAGCAAAATGTTGCGTATATTGAAAGAGTCCCAGAGATACGAGATAGCGCTGGCTATTACCCGAAATTTACGAGCTATGACAAAGAAAGATAGTATTCACGAGTTGTGTTTCTTTCTTCGCAATCGTGTTTTTGCTCTAATCAACAACGCTTTTTTTAAGTGGAAACATTTGAAGCTAAACAAGCACAATGACAGGGGCGGATCCAGGATTTTTTTAAAGAGGGGTGATGTTCGAGTTGTCCGATTCTGGTGCATGCGATTGATTGTACGCAACGCAATGCTTGTTTCTAATTCAATTCAGCCAGCTTTTCTCTCACTGACCATTCGCGACTTCGTAACAGCCTCGCCAAAAGTTCTAGTAAAGAATTACGAGGAGGTTGAGAATTTAGTGGATCTGCTGAGCGACAACGCAGATCAAAGTAAAATATCGATAATCCAAGAGCATTTCAGGTAA

Transcript

Ppa0G213600

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2RRV3	Protein PAT1 homolog 1 OS=Danio rerio OX=7955 GN=patl1 PE=1 SV=1
Q3TC46	Protein PAT1 homolog 1 OS=Mus musculus OX=10090 GN=Patl1 PE=1 SV=2
Q5R8Q4	Protein PAT1 homolog 1 OS=Pongo abelii OX=9601 GN=PATL1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004039 (this species only)

Pfam domain

No Pfam domain signature was detected for Ppa0G213600. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR039900 all species →	Family	Pat1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21551 all species →	TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000290 all species →	Biological Process	deadenylation-dependent decapping of nuclear-transcribed mRNA	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0033962 all species →	Biological Process	P-body assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12617	PATL1, PAT1; DNA topoisomerase 2-associated protein PAT1	-	Messenger RNA biogenesis	ko03019	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.