Gene detail

Detailed information of Ppa0G227840 in Paragorgia papillata

Genomic Location: Contig00352:1203497...1249484
NR annotation: XP_028411346.1, regulator of nonsense transcripts 1-like [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G227840

ATGAGTGTTGCGTCGCAAACCTTGACGTTTCTGGATACAGATCAACCTGATTTTGCAGCAGGTTATGATGGTTATCAAACGCTGCTAAATCACTTGGAGAATTTAATTGAGTCCTTTGAAAACGAAGACGAAACTTACTACAGTAAAGATTTACCATCTCATGCTTGCAGATACTGTGGTATTCATGACCCAGCTTCTGCTGTACTCTGTAACCACTGCAAGAAATGGTTTTGTAATGGTAACACATCTGGAAGCCACATAATTAATCATCTTGTACGAGCGAAACACGAGGAAGTCACACTGCATAAAGATGGACCATTTGGTGAAACTGTTCTTCAATGTTATAACTGTGCTTCAAAGAATGTATTTTTATTGGGATTTATTCCTGCTAAAGTCGATTTGGTTGTTGTTTTACTTTGTCGACAACCATGTGCCATACAAAGTAGCTTGAAAGGTTTGAACTGGGACCCTACACAGTGGCAGCCATTGATCACTGATCGTTGTTTCCCCTCATGGCTTGTCAAGATTCCAGCTGAAGATGATCAAATGAGAGCCATACAGATTAATGCACAACAAATCAATAAGCTTGAAGAACTATGGAAAAACAATCCTAATGCAGTTCTTGAAAATTTAGAAAAAACAGGAGTAGATGACAAGCCACAGCCTGTGATGTTGAGATATGAAGATGCCTATCAGTATCAAAATATTTTTGGTCCTCTTGTAAAACTTGAAGCAGATTATGATAAAAAACTCAAAGAATCCCAGACTCAGGACAATATTGTAATTCGATGGGACATTGGACTGAATAAGAAAAGGATTGCTTATTTTACCGTTCCTAAAGCAAATGATGATATAAGATTAATGGCGGGTGATAAACTAAGAGTACGGTACATTGGTAAACTACACAAACCTTGGCAGGGTGTTGGTCATGTGATTAAAGTGCCAAACAATTATGGTGAAGAAGTTGGGATTGAGTTAAGAAGCAACTTGGGTGCTCCCGTAGAGTGTACTCATAACTTTTGTGTTGACTTTGTTCGCAAATCAACATCATTTGATCGAACGCAAGCTGCTATGAAAACATTTGCTGTAGATGAGACTTCAGTTAGTGGTTATATTTATCACAAGTTACTTGGTCATGATATGGAAGAACAAATATTCAAATGTCCTTTACCTGAAACATTTTCTGCTCCTGGTTTACCAGAACTCAATCACTCCCAAGTTTGTGTTGTGAAGGCTGTTCTTCAAAGACCTCTGAGTCTTATTCAGGGTCCTCCAGGCATAGAGAAAACAGTCACTTCTGCCTCAGTTGTCTATCACTTGGTCAGGCAGAATATGGGACAAGTTTTGGTGTGTGCACCTGGTAACATTGCTGTTGATCAATTGACTGAGAAAATACACAAAACTGGACTCAAGGTTATTCGTCTGTGTGCTAAAAGTCGTAAGGCCATTGATACACCAGTTGCATTTCTTGCCTTGCATAATCAAGTGCGTAATATGGACAGTGTTCCTGAGTTGCAAAAACTACAACAGTTGAAAGATGAACAGGGAGAATTGTCTTCATCAGATGAAAAAAGATACAAGACTTTGAAACGAAATTGTGAACGAGAACTTCTTCAGAATGCTGATGTGATTTGTACAACTTGTGTCGGAGCTGGTGATTCACGTTTGTTCAAGTTCCGTTTTAAATCTGTGTTGGTTGATGAGTCTACTGAAGCTACAGAACCAGAATGTATGATCCCAGTGGTAGTGGGCTGTAAACAGCTTGTTCTTGTTGGTGATGATTGCCCGCTTGGTCCAGTGGTTATGTGCAAGAAAGCTGCAAATGCTGGACTATCACAGTCATTGTTTAAACGTTTGGTTGTTCTTGGTATTCTTCCTATTCAACTTCAAGTAGAATATCGTATGCATCCTTCCTTGAGTGAGTTTCCTTCCAACTTGAATTATTATGGAACTCTACAAAACGGTGTTACTGTTGCTGAGCGTTTGCAACCTGGCATGGATTTTCCATGGCCAGTTCCTGAAAAACCAATGTTGTTTTACCCTACAGCTGGACAAGAAGAAATTGGTTGTGGAACATCTTTTCTCGATAGAACTGAGGCTGGAGCTGTTGAAAAGATTGAAACTCGTTTCCTGCGTGCTAAACCAGAGCAGACTGGTCATTTTGTATTGCATCAGAAGTACTACGGTGCATCAAGTGCCAGCTCTTATCTGGTACGAGACTTACTAATTTGTGCTCTATGCACGCTTCATGCCGTTCTTACACTACTAGAACACATCAATTAA

Transcript

Ppa0G227840

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1RCY6	Regulator of nonsense transcripts 1 OS=Danio rerio OX=7955 GN=upf1 PE=2 SV=1
Q92900	Regulator of nonsense transcripts 1 OS=Homo sapiens OX=9606 GN=UPF1 PE=1 SV=2
Q9EPU0	Regulator of nonsense transcripts 1 OS=Mus musculus OX=10090 GN=Upf1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004555 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13086 all species →	AAA_11	AAA domain	Domain	Interproscan
PF13087 all species →	AAA_12	AAA domain	Domain	Interproscan
PF18141 all species →	UPF1_1B_dom	RNA helicase UPF1, 1B domain	Domain	Interproscan
PF09416 all species →	UPF1_Zn_bind	RNA helicase (UPF2 interacting domain)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041677 all species →	Domain	DNA2/NAM7 helicase, helicase domain	Interproscan
IPR045055 all species →	Family	DNA2/NAM7-like helicase	Interproscan
IPR040812 all species →	Domain	RNA helicase UPF1, 1B domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041679 all species →	Domain	DNA2/NAM7 helicase-like, C-terminal	Interproscan
IPR018999 all species →	Domain	RNA helicase UPF1, Cys/His rich zinc-binding domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10887 all species →	DNA2/NAM7 HELICASE FAMILY	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004386 all species →	Molecular Function	helicase activity	Interproscan
GO:0000184 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G227840.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.