Gene detail

Detailed information of Ppa0G235120 in Paragorgia papillata

Genomic Location: Contig00366:975495...988402
NR annotation: CAB3987486.1, Tudor domain-containing 1 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G235120

ATGGCGGAGCAGGGCAACGAGGAGTTCTTTGATATTCCTTCTCTGAAGCGAAATCCTGGCGTACAGTCGCCATGGCAGAACACAACACTTCAAAATGGCTTCGACCACGTGTATGGAAATTCTCCTCCTTCAGTCAATGGCTTTCAGAACTTTCATGGCGCGAAACAAAACATTGGGAATAGCTTTGGTGGCCAAACTTCGGGAAGTATTCAGACAACTACATCATTTCAAGAGAGCCCTGGAACACCGACATGTACTACTGACAATGCACAAAGTGACAACTTGGAAACATGGGATCCTATGGGTGTTGACTATTCTTGTCCAACTTTTAACTGCTACAAGAACTTTAATGTGCTTGCATCAGAACCACCAAGAAACCGGTCACCTGAGAAATTTCTTTCATCATCTCCAACAAAACAGAATGCTGCAGAAGACATCTCACTGTATGTTGCAAATATTCCAATCCAGATGACCCAGGAAGGATTAAGGAATCTTTTTCAAGGTGCTGGAAAAGTTTATTCGTGTTGTGTAATACCACAAAGAGATCCAAATCTAGATACAAAAATTGGGTTTGTCACATTCCATTCATGGAAGGAAGCTTCCAAAGCTATTGAATGTTATGATGGATTTTCTCTTGGAAATAATGCTAAACTACGAGTTAAAGTTGCTAATAGAAAAGGCCGACGTGGTAGTGATGTTGTGGCTAAAGACGAGGATTCAGCTGGTTCAGATACATTTGTCCAACCAAATGTGAATGGATTTAATGAAAAAGAAAATCGAGATGAAAGTTTACTTAATTTAACACGGCCGTGCACAAAATGTCAAAAGTTATCCAGTCAGCGATGTTCTGCATGCAAAGCTCCTTACTGCAGTCGAGAATGCCAAAAGGCAGACCGCGTCAACCACAAGACTGTGTGTACTTATAAGGGCAACGTTAAGGAAGCCACATCAGCCACATCAGCTGTTAAAGAACTGCCTCAATATGATCCATTTAATGATCCAGACTTTGACTGTATTGATATTTCTATAACAAATGATGTGACGGATTATAGCAAAAAGCAGGGGGGACTATCGGATAAAGAAATCACGGATAACGAAGCGAGAGGTACTCAAACCGGACATCCACTCCCCGAAACTTCTCACGGAGCTGCGAACAGGGTTTCCCAGGTGCCACCCGCTCCATCTCTCGTGCCTGACGAGTTTCGGCTTTTGGTATCAACGGTTGTCAGTGGGAACTTGGTTTGGGGTCAAGTGATCAACGATGACGTTTTGCCTCTTTTTGTGGCTCTCACAACGGACATGGCTATGATTAATGAGGGCTCCTTGGAAAGAATTCTTGAACCCGCTCCGGGAATGTATTGTTTGACGCGGTTTAACCTAGATGGGGACTGGTACAGATCAAGGGTGGAGCGTTGTACGAACGATAACAAGGTGGAAGTCTTCTTTGTCGATTACGGTAACAAGGAATGGAAGGAGAAGCATGAAATGTACTACTTACCTCCACAGTACTCGGATCTAGCCGCTCAAGCTCGTTTGTTCACGCTCAATTCAGTGACTGTGTCCCAGAATGTGGAAGTCCAGAGGAATATGTTGACTTTTCTCGATGGTTTGGTGTCTGCGAAAACTATACCCGCTAAAGTGGTCCGTGTTGTTCCCGGATGTTATCCCGAGGTGGTTCTGAGAGAGCCTGGTGCCCAACATACGGTGAACGAGTTAATGAGTGATCACCACAGAGAACTGGAATCGAGTCTTGGTATGGGATCAGCAACCAGTCAACCATCCAATGCCCATCCAGAATACACGACGGTACCGCAATATCCCCAGCTCAGCGGACAACCACAAAAAGTCGTCACCAATCCTCCATCTTGTGCTAAAGGCCTCAAGACGTATATGGCGTCAGCCGTTGCTAGGGAAGCTCTTCCTACAGAGAAGACTTTCGAGATTGTTGTGTCCGACATTTCATCTCCTAGTTTGTTTTGGATTCTTCTCGAAACCGCCAGTGACAAACTAATTCTTCTTTCTAACCTGCTCGAAGTCACTTACAAGGACTCGGTGTTTTCCGACTACGTTCCGGGTGTTGGCGAACTCATCGTCGCCAAGTTCAGCGACAGTTTGTGGTACCGCGCCAAGGTCGATTGCATTTACAACGACGGGACACTGAGGGTTACCTTCGTTGACTTTGGGAACAGTGAGGATGTGGGGCTCTCTGATGTGCGTAGGATCACAGGGGAACTCGTGGCTATCCCCAAGCTTGCCATTAAGTGTAGCCTGATCGGCGTCGAGAGCCTGTCCAAGACTGGAGGTTGGTCAGCGGAGTGTATCGAGTTGTGTCGATCATTGATGTTAAATGCGCGATGTAAAGCCACCGTGGTAGGTCACGTGCGTGATACAGTGATGTTAACGGTCCAGAGCTCGCTTACTCCAGACGGCTCAGGCTACGATGTCACTGAGGAACTGGTAACAAGAGGCTACGCTAAGTCGACGAAACACGAGCTTGCGCAGAGCAATGTTAACCAAGGACACCGTGCTTTACAAAGTCCCGCTTTTCAGGAAACCATCACGCAGGATACGTTTTCAACCGGTGTACATTCTTCGAGCGATGGCGGCAGTAGTACAGCTCCCACCAAAGGGCAAAGTGCCTCTCAGCATATTCCATCCGTCAATACCTCTCCCAGTATTTCCTCATCCCACCAGCTTTCGGATTCTACATCCATTCAAAACAAACTTCGGTCTCACACGCAACTTTTGCCTACTAACGCTAGTGGGTCTCCTCAGGATACGATTGTTCCTGAACCAAAACCCCAACGTGACCTGTCGCTAGGCAACCAACCACCACGACGTCACCTTACAGAGAACTCACCCCCGAATCCAACGTTCACTCAAAACGAAACTCGTTCCCATGTTCCGGAACTTTCGCATGGCAACACTTCTCGCTCTTATCAGGATACCATTGGGTCCCAGGTTCCTGAAACAACCCCCCAACATGGTCCGTCGCGTAGCAACCAACCACGCGTCCTACCACTCCCGAACATTCCACCCGGCTCGTTCGATGTGATCGTTCGAAATGTTATTTCGGGGGATGAGATTTACGTTCAGATGATCAATCCACAACTGGTTCACATGCTTCACAAGTGCGTACGAGAACTGAATGAGTTCTGCGAGGGATCCAAAGCACCAAGTGATGACGTCAATATTGAGATTGGTAGCTTGGGTTGTGCTAAGTTCTCCTTGGATAACGTTTGGTATCGGGCCCAAGTCGTTGCCATCGAAACAAATGGCTACAGAGTTCGGTTTGTTGATTTTGGAAACACCGAGGTTGTTTCGACCGATGCTTTTCGCCACCCACCTGAATCATTTTATCAATTAGCTCCTCAGGCTCTGCGATGTCGTTTGGCGCGTTCCAGTGGGAATGAAGGTTGGGGCGAGCAAAGTAAAGAGATGGTGCTGAAGTTAACGACGAATAAGCAATTGTCTTGTACAGTACTTGATCATACTTCTCCGTTCTCTGTGAAGTTGGAGCATTGTGTTGATGGTCAGCGGATTGATATAGCGAAGGAACTTCAGAAAGGTAAACACTTAAATGTGTTTTCTCTTCTAGAGATGTCACCTTATGCTTCATCTGAAAACACTTTGCGACGTGGCTCCTCGTCATCTGGCAACGCTCGAACTCGCTCCAGCTTCAGCCAAAGTGTTTTGACTCCAGCACTAACGAGCGCAGCAATTGGAGGGCTTGGGGCAGAGTGTGATCTGTTGGTAACCGAGGCAGCCCACCCGACCTACTTTTGGGCACAACTTGCCGTACGCAGCAACATCGAAGAACTAAACCTTTTAACACAAGAACTGAATGCACATTACAATAACACAAGCTATCCTCCATTCGAAGTGAAAGTGGATCAGTTTTGTGCTTGTAAATTCTCCCTTGACAATCTTTGGTACCGAGGCTTTGTGAAAAACGATAACTCGAATGGCATTGTGGTACACTTTGTCGATTTTGGCAACAGCGAGGTGACGACGGCGGATATGTTGCGCCCTTTGGAGAGCCAATTTCAGGTGCAGCCTTACAGAGCGTTGCTGTGTTCCATGGCGTGCCTAGAGCCGGCAGAAGGAAAGCTTTGGAGCGAGGAAGCTATCGCGTATTTCAAAAGCAAGGTGTTAAGGAAGGTGTTGAAATGTACTGTTGTGTTCAACAGTTACTCTCGTGTGTTCATTGATATACAAGATCCAGAATCTGACGACGGTGAATCGCTCAAAACAAGTTTTCTTGAGAAAAGTATGGCTAAACAAGTTGGAAACTATTCTTTATCTCCGCAAAAGAAAGGTTTTCCTTGTCAAGATCACAAACGAGGGCAAACGTCTGAGGGTAATCACGTGAGCGGTATCCCTGCTGAACTATCCTTCGAGCATAACTCGTTTCAACAGAGAAACCAAGGTAGTCAGGCGGTCGGACATGGTAATGCTGTTGGAGGAACTTCGCCAGTAACCGGAGGTACATCGTCAACAGTCGGAGGTACATCGTCAACAGTCGGTGATGCATCGTCCCAAGTTGGAAGAACATCGTCAGAAGCCAGGAAAGCATCGGTCGGAGGTACATCGTTATCAGTCTGTGGTGCATCATCATTGGTTGGAGGTACATCGTCACAAGTCGGAGGTACATCGTCACAAGTCGGATGTACATCGTCACCAGTCGGAAGTACGTCGTCACAAGTCGGAGGTACAATTGCGCCAGTTTTAGGAAACTTGCCCAATCAAGCCAACCGCGACTTTCCCGAGGCCCATAAAAGAATACCAGTTTCCGACGAACCTTCGACTACGTCAAGTCGTGGTACACCGGAGGAACTCGAGAGAACCATGGTTTCCGAGTTTAAGCCTGTTACGTTGATGAACCTGGATCATATGAGAGTGTTGGTGTGTGTAGCAAGTGGTCCGCGCGAGATCTACTTTCACGTGATTGATTCTGATGGTGTTAGGGCTTACACGGCGTTATTTGATCGTCTGCAAGTACAGTTTATCAACAGCAACCAAGTGTACGTGCCAATACCAGGTGAACTGTGCTGCGCGAAATTCTCTTTTGATAACTGTTGGTACCGCGCAGCTGTAAGTAACGTGGACATCAACACAGGATTTGCTTCGGTTCAGTTTGTCGACTACGGAAACCGAGATAATGTTGCGTTCTCTTCCCTTAGACCCATCACTCCATCGCTAACGGAACTTCCTTTTCATGCCCAACATGTCTCTCTAGCTGGGGTGAGCTTAGATGACGCAGCCTGGACGCAGGAGCGGTTGGCCTACCTCACTACCGTGCTCATGGAGAAACCGCTGATTGCTAGAGTAATCCGACAGGCGCAAGGCGTTGTGGAAGTAGAGCTGTACGACACTTCTTGCGAGGAGGATATTTTGATAAACTCTCTTTTCACTGAACAAGGACATTCGGCAGCCGCACCTCAACCTAACAACCCGACAATGCCCGACGTCACTCCGAAAGGTCACGACACTGCCAATACAATACCCGAAGTTATCCCGACTGAGTCCGAGTTCGAGGTTCTCGTTACGGAAGTCATTGGGCCTGACTGTTTTTGGGTGCAGCATGTTGTCATGGATACCATTACTCAGTTTACTCTAATGACCCAACAGATGAACTTGGTTTGCGAAAGTACCGTGGGAGGATTAGCGACAGTCAATGTGGGTGACGTTTGCTGTTGTAAGTTTGCGTGTGATGGTCAGTGGTACAGAGCCAGAGTTGAAGCTCTTCTCCAAAATGGTCTTGTTCGAGTTTTCTACGTCGATTTTGGAAACAGCGAAGAAGTTGAGCCCACCGCGCTGAAACCGCTGGACCAAGAATGCGTTCAGTTTCCCGCGCAAGCTGTTCAGTGTACGCTGGCCAATCTACAACCGGCTCACGGGGCGTGGTCTGCTAAGGCTATCGAATGGTTGAAAAGGTGTATCATGAGTAAGCGTCTCTTTGCGAGGGTCGCCGGCAGAAATGGTTCTGTTTTGCAGCTGGAGTTAATCGATACCTCAAATCCCGACCGAGATGTGTTTATCAATTTCGAAATGGTTCAAACAGAAGCAGCGAGAATGGCTTGA

Transcript

Ppa0G235120

Protein

Ppa0G235120

MAEQGNEEFFDIPSLKRNPGVQSPWQNTTLQNGFDHVYGNSPPSVNGFQNFHGAKQNIGNSFGGQTSGSIQTTTSFQESPGTPTCTTDNAQSDNLETWDPMGVDYSCPTFNCYKNFNVLASEPPRNRSPEKFLSSSPTKQNAAEDISLYVANIPIQMTQEGLRNLFQGAGKVYSCCVIPQRDPNLDTKIGFVTFHSWKEASKAIECYDGFSLGNNAKLRVKVANRKGRRGSDVVAKDEDSAGSDTFVQPNVNGFNEKENRDESLLNLTRPCTKCQKLSSQRCSACKAPYCSRECQKADRVNHKTVCTYKGNVKEATSATSAVKELPQYDPFNDPDFDCIDISITNDVTDYSKKQGGLSDKEITDNEARGTQTGHPLPETSHGAANRVSQVPPAPSLVPDEFRLLVSTVVSGNLVWGQVINDDVLPLFVALTTDMAMINEGSLERILEPAPGMYCLTRFNLDGDWYRSRVERCTNDNKVEVFFVDYGNKEWKEKHEMYYLPPQYSDLAAQARLFTLNSVTVSQNVEVQRNMLTFLDGLVSAKTIPAKVVRVVPGCYPEVVLREPGAQHTVNELMSDHHRELESSLGMGSATSQPSNAHPEYTTVPQYPQLSGQPQKVVTNPPSCAKGLKTYMASAVAREALPTEKTFEIVVSDISSPSLFWILLETASDKLILLSNLLEVTYKDSVFSDYVPGVGELIVAKFSDSLWYRAKVDCIYNDGTLRVTFVDFGNSEDVGLSDVRRITGELVAIPKLAIKCSLIGVESLSKTGGWSAECIELCRSLMLNARCKATVVGHVRDTVMLTVQSSLTPDGSGYDVTEELVTRGYAKSTKHELAQSNVNQGHRALQSPAFQETITQDTFSTGVHSSSDGGSSTAPTKGQSASQHIPSVNTSPSISSSHQLSDSTSIQNKLRSHTQLLPTNASGSPQDTIVPEPKPQRDLSLGNQPPRRHLTENSPPNPTFTQNETRSHVPELSHGNTSRSYQDTIGSQVPETTPQHGPSRSNQPRVLPLPNIPPGSFDVIVRNVISGDEIYVQMINPQLVHMLHKCVRELNEFCEGSKAPSDDVNIEIGSLGCAKFSLDNVWYRAQVVAIETNGYRVRFVDFGNTEVVSTDAFRHPPESFYQLAPQALRCRLARSSGNEGWGEQSKEMVLKLTTNKQLSCTVLDHTSPFSVKLEHCVDGQRIDIAKELQKGKHLNVFSLLEMSPYASSENTLRRGSSSSGNARTRSSFSQSVLTPALTSAAIGGLGAECDLLVTEAAHPTYFWAQLAVRSNIEELNLLTQELNAHYNNTSYPPFEVKVDQFCACKFSLDNLWYRGFVKNDNSNGIVVHFVDFGNSEVTTADMLRPLESQFQVQPYRALLCSMACLEPAEGKLWSEEAIAYFKSKVLRKVLKCTVVFNSYSRVFIDIQDPESDDGESLKTSFLEKSMAKQVGNYSLSPQKKGFPCQDHKRGQTSEGNHVSGIPAELSFEHNSFQQRNQGSQAVGHGNAVGGTSPVTGGTSSTVGGTSSTVGDASSQVGRTSSEARKASVGGTSLSVCGASSLVGGTSSQVGGTSSQVGCTSSPVGSTSSQVGGTIAPVLGNLPNQANRDFPEAHKRIPVSDEPSTTSSRGTPEELERTMVSEFKPVTLMNLDHMRVLVCVASGPREIYFHVIDSDGVRAYTALFDRLQVQFINSNQVYVPIPGELCCAKFSFDNCWYRAAVSNVDINTGFASVQFVDYGNRDNVAFSSLRPITPSLTELPFHAQHVSLAGVSLDDAAWTQERLAYLTTVLMEKPLIARVIRQAQGVVEVELYDTSCEEDILINSLFTEQGHSAAAPQPNNPTMPDVTPKGHDTANTIPEVIPTESEFEVLVTEVIGPDCFWVQHVVMDTITQFTLMTQQMNLVCESTVGGLATVNVGDVCCCKFACDGQWYRARVEALLQNGLVRVFYVDFGNSEEVEPTALKPLDQECVQFPAQAVQCTLANLQPAHGAWSAKAIEWLKRCIMSKRLFARVAGRNGSVLQLELIDTSNPDRDVFINFEMVQTEAARMA

Uniprot

Uniprot term	Description
Q58EK5	Tudor domain-containing protein 1 OS=Danio rerio OX=7955 GN=tdrd1 PE=1 SV=2
P25823	Protein tudor OS=Drosophila melanogaster OX=7227 GN=tud PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00567	TUDOR	Tudor domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF01753	zf-MYND	MYND finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002999	Domain	Tudor domain	Interproscan
IPR035437	Homologous_superfamily	SNase-like, OB-fold superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR002893	Domain	Zinc finger, MYND-type	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR050621	Family	Tudor domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22948	TUDOR DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18405	TDRD1_4_6_7; tudor domain-containing protein 1/4/6/7	-	Chromosome and associated proteins	ko03036	deepkoala