Gene detail

Detailed information of Ppa0G235130 in Paragorgia papillata

Genomic Location: Contig00366:1034390...1036677
NR annotation: XP_046850120.1, uncharacterized protein LOC124443679 isoform X1 [Xenia sp. Carnegie-2017]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002753 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16739 all species →	CARD_2	Caspase recruitment domain	Domain	Interproscan
PF13676 all species →	TIR_2	TIR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR031964 all species →	Domain	Caspase recruitment domain	Interproscan
IPR000157 all species →	Domain	Toll/interleukin-1 receptor homology (TIR) domain	Interproscan
IPR035897 all species →	Homologous_superfamily	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Interproscan
IPR017279 all species →	Family	Toll-interleukin 1 receptor domain-containing adaptor protein, Tirap	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22662 all species →	TIRAP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0007249 all species →	Biological Process	canonical NF-kappaB signal transduction	Interproscan
GO:0032760 all species →	Biological Process	positive regulation of tumor necrosis factor production	Interproscan
GO:0032872 all species →	Biological Process	regulation of stress-activated MAPK cascade	Interproscan
GO:0034142 all species →	Biological Process	toll-like receptor 4 signaling pathway	Interproscan
GO:0035662 all species →	Molecular Function	Toll-like receptor 4 binding	Interproscan
GO:0035663 all species →	Molecular Function	Toll-like receptor 2 binding	Interproscan
GO:0043123 all species →	Biological Process	positive regulation of canonical NF-kappaB signal transduction	Interproscan
GO:2000343 all species →	Biological Process	positive regulation of chemokine (C-X-C motif) ligand 2 production	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04729	MYD88; myeloid differentiation primary response protein MyD88	-	Alcoholic liver disease	ko04936	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.