Gene detail

Detailed information of Ppa0G236910 in Paragorgia papillata

Genomic Location: Contig00371:127733...151541
NR annotation: XP_028416678.1, protein SHQ1 homolog isoform X1 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3MHH1	Protein SHQ1 homolog OS=Bos taurus OX=9913 GN=SHQ1 PE=2 SV=1
Q6PI26	Protein SHQ1 homolog OS=Homo sapiens OX=9606 GN=SHQ1 PE=1 SV=2
Q05B18	Protein SHQ1 homolog OS=Xenopus tropicalis OX=8364 GN=shq1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005198 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21413 all species →	SHQ1-like_CS	SHQ1-like, CS domain	Domain	Interproscan
PF04925 all species →	SHQ1	SHQ1 protein, Shq1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039742 all species →	Family	Protein Shq1	Interproscan
IPR048696 all species →	Domain	SHQ1-like, CS domain	Interproscan
IPR008978 all species →	Homologous_superfamily	HSP20-like chaperone	Interproscan
IPR007009 all species →	Domain	Shq1, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12967 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000493 all species →	Biological Process	box H/ACA snoRNP assembly	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14764	SHQ1; protein SHQ1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.