Gene detail

Detailed information of Ppa0G250610 in Paragorgia papillata

Genomic Location: Contig00396:8746225...8763845
NR annotation: CAB3988438.1, lysine-specific histone demethylase 1B [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G250610

ATGTCTGTGCAACCAGCGAGGAGGTGTAGAAAAAAGAAACAATACGAAGTTCATGAAACTGAAACAGAAAAGAGATATCGAAAATGTGAAAAAGCTGGGTGCCCTGCTGAGAGGCCCGATTGCTTCTCAAATGCCATAGAAAGTTGTTGTGGAAATGGATATACATCAAGATGGTATCACATGTCTGATGGGGAACATTTTTGTAATGAATGTTTTGACCATTATTACAGAAGTCACAAAGAGGGTTTTCCAGTTTTTGAACAATGGAAACGTGAGTGGAACAGCAACAGTCAAACTGAGGCCAACTTGAAAATATTCATGGCTGAAAGGATTTTGCCGTACTGGGTAAAGTGTTGTGATTGTGGCAAGTGGAGACAGTATCCACTGACAGAAGGTGATTTGAAAACACAAGCTATAGAAACATGGACTTGTAGAAGTTATAGAAAACTAAAGAAGAAAAGTGAGGATGAAAAAGTTAAACACAATTTGTGCAACAGCGCTGAAGATGAGAGAGTCCATCACTGTCTTTCTCCATTTTGGTTGGAAAGTCTCTCGTATACTCCTCTCTTAAAGTTCAGTCCTTCAGCGCCTCTGGTAGCGTTATATTATCTTGACGGAGTGGGATTGAGTCCTACTGACAGCAACTGGGAGCAAGGCGATCTGCAAGAACAGCTAAATGAAGGAGATGTCAGACCATTTTCTAACCCCGAAGCGGATGAGGGTGTAGCGTTTTGTTTTCGACCTGATGTCATGGAGGAAGTGGAGATTGAACATTTTCCAGAATTTGGAAGAACACAAAATAGATACCTGGCACTGAGAAACTTGGTCCTCACTCTTTGGAGTCTCAACTGTAAGGAAATTCTAACTCTTGAAAAATGTACAAGTCATTTAATATTTCGTGGTTTGGCTCGCATTGCTATTATACCTCAGTTAGAAAGAATATTGGAGTACTTTACGATCAAAGGCTACGTTAATCACGGTATTCTAAAGTGCAGTACACAAAACTGTCTTCCTATCTGCACTCCATGTACAAATTCAAATGTTTTGGTTATTGGAGCTGGAGCCGCTGGACTGGCTACTGCAAGACAACTCAGTAACTTCGGTATAAAGGTAACCGTCCTAGAAGCGAGAGAGCGCATAGGAGGTCGTGTTTGTGATGATTATCTTGGAGGTGTATGTGTTGGGAAAGGTGCTCAGATTATGAATGGTTGTACTAATAATCCCATGTCTGTCTTGGTTCAACAGTGTGGTCTACCGATGAAGTCCATTGGTGATAAATGTGAACTGGTTAAAGAAGATGGAAGCCTTATTGACGCAGAAACAGACGAACGAGTTGACTTTCATTTCAACGCTCTACTTGATGCTGTCGCTGATTGGCGGAAACATTCGAAAGTCGACTGTTCTCTCGGAGAAAAACTGTTGGAAATTCATAAAATGTTTATTGACCAAACAGCAACAGATTTTACTGAAGCGTCAGATCGTCTTCTCCAGTTCCATCTTGGCAATCTGGAATACGCTTGTGCAACAGTGTTAGAAAATGTTTCTGCTCTGTCGTGGGATCAGAACGAGTCGTTCCCACAATTCTCAGGCAACCACACTATCCTAACACATGGCTACTCAATTATTTTAAAACGTCTTGTCTGTGCAATTGATTATTCTGGCAAAACAGTGTCGGTGACTGCAAAAAATGGAGAACTATTTTCAGGTGATAAGGTTGTTGTCACTGTACCGATTGCTTTATTGAAGTCAGAATCGATTTCATTTACGCCTCCTCTACCGACAGAAAAAACAGAAGCTATTAACAGGCTTGGCGCTGGCTTGATTGAAAAGGTAATCCTCTCCTTTTCTTCCTGTTTTTGGCACAAGTATTCGCAGAAAACCGATTCATTTGGGCACGTTCCCAACTCCAAGGAAACGAGAGGATTCTGTGGCATTTTCTACGATCTGTCACCCAAGACTTTAGGAAAAACGAAAAAAGAAGGTCGTCATGTTTTAATGACCGTACTAGCAGGAAGAGCTGCCATTGAAGCTCAAGAAATGGATGATAAAGAGATAGTAAATCGATGCATAGAGTTACTGAAGTCACTGTTTCCAGAAGAGACCGTACCTGAACCGTTAGCGTATATTGTAACTCGATGGGGGAAAGAACCCTTCTCAAAAATGGCGTACTCATTTGTTGCCAAAGAAGGGACTGGTGAAGACTATACGACAATGAGTAATGACGTGGAGAAAAAACTATATTTTGCTGGAGAGGCCACCAACAGACAATTTCCTCAGACTGTCTCGGGCGCTTATCTTAGCGGAACTCGGGAGGCTTACAAAATTCAAACTGAATTACTAAACGACGAAAATCAATAA

Transcript

Ppa0G250610

Protein

Uniprot

Uniprot term	Description
Q8NB78	Lysine-specific histone demethylase 2 OS=Homo sapiens OX=9606 GN=KDM1B PE=1 SV=3
Q8CIG3	Lysine-specific histone demethylase 1B OS=Mus musculus OX=10090 GN=Kdm1b PE=1 SV=1
Q21988	Lysine-specific histone demethylase 1B homolog OS=Caenorhabditis elegans OX=6239 GN=amx-1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04433	SWIRM	SWIRM domain	Domain	Interproscan
PF01593	Amino_oxidase	Flavin containing amine oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR011124	Domain	Zinc finger, CW-type	Interproscan
IPR007526	Domain	SWIRM domain	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036188	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR050281	Family	Flavin monoamine oxidase and related enzymes	Interproscan
IPR002937	Domain	Amine oxidase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10742	FLAVIN MONOAMINE OXIDASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0008134	Molecular Function	transcription factor binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0045944	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0050660	Molecular Function	flavin adenine dinucleotide binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19413	KDM1B, AOF1, LSD2; lysine-specific histone demethylase 1B	EC:1.-.-.-	Chromosome and associated proteins	ko03036	deepkoala