Gene detail

Detailed information of Ppa0G252740 in Paragorgia papillata

Genomic Location: Contig00402:1453126...1469706
NR annotation: CAB3990875.1, Nucleo TPR [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G252740

ATGGCGGACGTAGAAGGTGTGGAAGATTTTATATCCAGCGAAATTGGAGTTCCTCGAGCTACGATTTCTCAATGTTCTACATCTTCAGATGATGCTAAAGTGTTATTTGAAAAAATAAGAGATTATTTAGTCAATCAACACACGATAAAGGAGAAATTAAAGTCTAATGTTACGAGCTTGCGACGTGCACGTGTAAACGTTGATCAACAATTTAATCAACTTGAAAAGCAACTCATTTCGTGCAATAGTAAATTGGAACACGAGGTGAAAAGCAAAGAAGCTATAAACAAACGCTTGGAAAAAACATCGGATGAATTGGAAGACAAATCAAAGAAATTACATGAAGTAGAAACTATCAAAGAAAATGCAGCAACTAATTTTACTCGTGTGTCACAACTTAATGAAAATCTCGAAGCTGAGAAGCTTAACTTGGTAACTACAGTAGAGAGAAAAAACAAAGAAATTGATCGGTTAAATGGAGAGTGGAAGTCGATGTTTCAAAAAGTGAACAGTGCAAATTCATTGCAGTATGAAGCAAAGGCTAAATTAGATGAACTGGGAAGTAAAGAAAGTTTATATCAGCTTAAAGAAAAACGATTGGAGCAAGAAAAAGATCTTTTGAAGAAACAGAATGAGTGGTTAGATTCACAGCTCAAGGAGAAATCTGAAGCCTTTTTCTCTTTCCAAAAAGAAAAGTCAGGAAAAGTACAACATCTACAAAGTGAATTAGATGCTAATACTGAAGAGGTTAAAAACTTGACATCCCTTACAGAGAGCTTGAGAGAAACAAATGAAGATCTAAAGTTCAAAACAAATTCTTTTATGGACAGGATAAAAGACGCTAAAGAACTACAAACGAAAACAGAAGAACAATACAAACTTGAGATTTCATCCCAAAGCAAGCTAGCTATGTTATACAAGGATGCAGCTGATGCATCTAAACTTAGGTGTGAAGAGTTGAGCAATGCCATGGAGGAATTGGAGAACATGTTTAAAAAAGAAAAAAGTGAATGTTTGGATGCTGAGACGAAGCTGAAAGAAAGTGAAATAAATCATTTAAACAGTGTTAAAGAATACGATGAGAAAGTTGAAAGTTTGCAGAATGAACTTACACGTGCAAATGGTCTTTTGGAAGCTGCTCGGCAGCGAGGAACTGCTCCAATGTCCCCAGAAGCTTTAGCTGCACTATCACCAACAGCTGCTGCCACGAGTTCGTTTTTGAAGTCCGGGATGACACTTACCCAGATTTACGACCAGTATATTGAAACTATTGATTCCTTACAATTGGAAAAAGCTGAGAATGCATGTCTGAAAGAGTATATGGGTCAAATTTTAAAAGACGTTGAAGAGAAGGCTCCTCTATTGAAACAGCAGAGAAAAGATTATGAAAATGCATTGTCCACTGTTGATAGACTATCTGCATCGCTGGAGTCGGCCATGTCGGAGTGTGAAAGATTTAGTACAGAAGCGAATGAAGCAGTAGATAAATCAAAACATCTGGAACGAGAGAACGAACGGATGAAACTATTAACTGCTGATCTTGGTAATCAGGTACAAGTATTGCTTAGAGAATCTGCACAAGCTAATGGAGGTAATGTGACTGCAGATTATCAACTAGCATCAACTGATGGAGTATCTAGTTCATCTGGAGTCATTTCAGAACATCTTGTCACATTCAGAAATATTGAGGAGTTGCAAGAGCAAAACCAGAAGCTCTTGACTGTAGTCCGAGAACTGAGTGAGGAAAGAGAAAATCAGGAGAATACTAACGAAACTGTACATCATGATTTGAAAAAGCAGCTAGATGCCGCTCTTGGTGAATTAGAAGAGTTAAAAACAGCACGTTCTCGACAAATTCAAATGGTTGAAGCACTTGTTCGTCAGAGGGATATGTACAGGGTATTACTTTCAAACACTGGTCAATCACCTTCCGTGTCCGTCGACATCGATGCAATATTGAGAGGATGTGAAATGAAAGCTACGGCTGCCATTTCACAAGCGAAGCCTTGGAATCCTTTTGCCAAAGGCGTACATGCAAGGGATCTATCTGTGGAACTGCTAGTACCAAAACACAAATGGCAATTCGGAGAGCTACGAGCGCTGAAGACGCGAGGGGATGGAAACTGCCTCTATAGGGCTTGCTCAAGGTTGCTTTGTGGAAAAGAAGACCTTTGGTCATTATTGCGTGATCTAAGCAGCATTGAATTGTTCAACAATCAGGACTTTTATGCATTCCATCCGTATATCATAGAAAAGTCCCATTACTTCCACAATGATAATACTGCTTTTTCTGCTGCTGTGTCTGATGCTGCATTGGCCGATGGCTATGACCGAAACAATCCCTCCAGTAGGATGGTAGTAGTTAAACGAGAGGCAATCAGAAATGCTACAAGTGGAACTTATGCCTCCCTTATGTGTATGTTAGGCCTGTCTTCTGTTACTGGGATGAGTATCACATCAGTTCACCCAGAAATAATAGGCAAGGAAACCAAGTATTCACAAATGCAAAATGGAACAATTCATCCAAGAACATCGCATGGATTGTTTACAAGTAAGCTTGTTCAGGAGGTAAAACTGGTTATTTTGTGGTCAAGAGATGGCATTAATCTTCTTCCTGGTATTGAGACTACATTCCAACCAAACCATTTTGTCCCACTGATTGAGTCTAAAACTTAA

Transcript

Ppa0G252740

Protein

Uniprot

Gene family

Uniprot term	Description
P12270	Nucleoprotein TPR OS=Homo sapiens OX=9606 GN=TPR PE=1 SV=3
F1MA98	Nucleoprotein TPR OS=Rattus norvegicus OX=10116 GN=Tpr PE=1 SV=1
F6ZDS4	Nucleoprotein TPR OS=Mus musculus OX=10090 GN=Tpr PE=1 SV=1

Gene family	Subfamily
Ubiquitin Family	DUB\|OTU\|OTU

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
--	--	--	--	--

InterPro

InterPro term	Type	Description	Source
IPR047273	Domain	Vertnin-like, ovarian tumor domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18898	NUCLEOPROTEIN TPR-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005643	Cellular Component	nuclear pore	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan
GO:0017056	Molecular Function	structural constituent of nuclear pore	Interproscan
GO:1901673	Biological Process	regulation of mitotic spindle assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06679	MAD1; mitotic spindle assembly checkpoint protein MAD1	-	Chromosome and associated proteins	ko03036	deepkoala