Genomic Location: Contig00405:134367...167625
NR annotation: XP_028415325.1, ATP-dependent DNA helicase PIF1-like isoform X1 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families
| CDS |
| Ppa0G254580 |
| Transcript |
| Ppa0G254580 |
| Protein |
| Ppa0G254580 |
| UniProt accession | Description |
|---|---|
| Q0R4F1 | ATP-dependent DNA helicase PIF1 OS=Xenopus laevis OX=8355 GN=pif1 PE=2 SV=1 |
| Q7ZV90 | ATP-dependent DNA helicase PIF1 OS=Danio rerio OX=7955 GN=pif1 PE=2 SV=1 |
| Q9H611 | ATP-dependent DNA helicase PIF1 OS=Homo sapiens OX=9606 GN=PIF1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001024 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF21530 all species → | Pif1_2B_dom | DNA helicase Pif1, 2B domain | Domain | Interproscan |
| PF05970 all species → | PIF1 | PIF1-like helicase | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR027417 all species → | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR003593 all species → | Domain | AAA+ ATPase domain | Interproscan |
| IPR049163 all species → | Domain | DNA helicase Pif1-like, 2B domain | Interproscan |
| IPR051055 all species → | Family | PIF1 DNA helicase | Interproscan |
| IPR048293 all species → | Family | DNA helicase PIF1/RRM3/pfh1 | Interproscan |
| IPR010285 all species → | Family | DNA helicase Pif1-like | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR47642 all species → | ATP-DEPENDENT DNA HELICASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0016887 all species → | Molecular Function | ATP hydrolysis activity | Interproscan |
| GO:0000723 all species → | Biological Process | telomere maintenance | Interproscan |
| GO:0003678 all species → | Molecular Function | DNA helicase activity | Interproscan |
| GO:0006281 all species → | Biological Process | DNA repair | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K15255 | PIF1; ATP-dependent DNA helicase PIF1 | EC:5.6.2.3 | Mitochondrial biogenesis | ko03029 | deepkoala |
Genes whose expression across the transcriptome samples of Paragorgia papillata tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Paragorgia papillata, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |