Gene detail

Detailed information of Ppa0G254600 in Paragorgia papillata

Genomic Location: Contig00405:182366...219239
NR annotation: CAB3994677.1, rap guanine nucleotide exchange factor 4 isoform X4 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G254600

ATGACCGACTCAGGCGGCCAAGGACAGTGTACTAATCCTTTCGAGGTTCCGTTCGACAAATTCAAAACAAAACGTCGCCGAACTTTCAGTGGCCGCGGAAAGTACTTTGCCAATGTCAAACAGTTCTTCAACGGCTGTAAGAGTCGAGTTCGGAGCCTCAAGGAAAGGTCCGTGTATGATGTAGGGTGTCAATTCGTGAAGAAAGAGGACAATGCGGACTCGAAAGTGACGAACCAAGAGACTTCAACGAGTATTGAAAAGGATTCCGTCATCGTACGCTTCGATCATAAAGATGTTTTGATTCTCGACAGGAAGAAAGACCCGAACCTTATTTTCACTGATGACGAAGTAGACCCAAAGTGCTATGATGTTACCACTGGTCTACCGGAAACTATTCTTGAATACCTCTTGGAGACTCGATTAGATGATGACGAAGAACAGGAAGCCAATCGCAGAGATACTTTGGTTGATGATTTCCTTCTCGCATTTCCACTTTTTATGACCGAAGAAGAGATGTGCTCTATACTCAAAAGATACTATCATGGAACAGTACGCATTCGACACGCCTTTTCGTTCTCTTCGGATAAGAAACAATCGCCGTACGAATTAAGTCGAAAAAGAAAGCAAAGACTGATCCGCTTCATCGTTCGATGGAGCAAACTTTGTCAGCATATCTTTCACGAAAATGAACACCTAAAGCAACTTCTTGAGAGTTTGGCAACTGATCTTGAAAAAGACAACCTGCTGGAAGAGTTGTCCCTGCTGGAACAGGTTACAGATCAAACATCCAATTGCTCTAGCTTATGCAATGGGTCCAATGATTTAATATCGACGTCGTTATCAGACAGTAAAGATTTGCCGAACATGGATCATTCTCCTGATAAATCACGAGTAGCATACGATGACGACTTTTTTGCCCGACTGAATGACCGTTCTCCTATTCGAGCCTGTGATAATGTAATATTTCAAGTATATCGTTCAGATCATACATACTCCAAACTTCGTCTTAGACGAGACACGACTGTCAGAAATATTATTAAACAATGCTGTGAGAAATGGAGGATTGATGACGAATGTTTACTCTGTGAGCTGAAGTCTAACGGAGAAAAAAAAGTTTTTAAGTACGACGATGTGGGTGTTGTGTCTCGGGTCAGTGTTAATGGAAGACTATTTGTGGTTCCAAGGCAAGAACTTGATGCAATCGTTCCTTTACCGGAACAAGAAGGCCCAGAGAATGAAACTTCGAGCATGTTGAACGACCTTAGCGCAAAAGAGTTAGCATATTATTTGACAATATATGACAACCAGTTGTTTAGATCAGTTAGCGTGTATGAGTTTCTGTATCATGTGTTTGGTGTAGAAAACTTTCCCGGTAGAATAACAACCAACCTGGATTTATTTTTAAGAAGACTTGACGAGATTCAATTCTGGGTGGCGACTGAGCTATGTCTGGCAAGTCACCTTTCGAAAAGAGTTCAACTCATGAAGAAGTTTATCAAAATTGCTGCACATTGTAAAGAATACAAGAATTGGAATACATTCTTTGCTATTATTTTGGGGCTTAACAACTCTGCTGTTAGCCGGATGCAAAGTTCGTGGGAGAGGTTACCGACGAAATTCCGAAAAATGTACGAAGACTTTGAAGGAGTCTTGAATCCTTCGAGAAATCACAGAGTATATAGATTGTCAATGGGTTCCTTGGAACCCCCAATAATCCCGTTCATTCCCCTATTTATCAAAGATATGACATTCGCGCATGAAGGAAGCGAAACGTTGACAAGTGAACGACTGGTGAACTTTACCAAAATGAGTTTGGTAGCATCAACTTTAAGACTGGTGCAGTTCTGCCGGAGTCATCCGCTTGCTGTGGAACCGCCAACCATTTCAAAAGGTTCGGGTGGGGCTTACAACTATGTAAGACAACTTCATGTTATCGACCATCAAGAGCGGCTTGATCAGCTCTCCTTGGATATGGAATTTAAACCAATGTCTCCGCTGAGATTCCAAACCTTATAA

Transcript

Ppa0G254600

Protein

Uniprot

Uniprot term	Description
Q8WZA2	Rap guanine nucleotide exchange factor 4 OS=Homo sapiens OX=9606 GN=RAPGEF4 PE=1 SV=1
Q9EQZ6	Rap guanine nucleotide exchange factor 4 OS=Mus musculus OX=10090 GN=Rapgef4 PE=1 SV=1
Q9Z1C7	Rap guanine nucleotide exchange factor 4 (Fragment) OS=Rattus norvegicus OX=10116 GN=Rapgef4 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00617	RasGEF	RasGEF domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023578	Homologous_superfamily	Ras guanine nucleotide exchange factor domain superfamily	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000651	Domain	Ras-like guanine nucleotide exchange factor, N-terminal	Interproscan
IPR001895	Domain	Ras guanine-nucleotide exchange factors catalytic domain	Interproscan
IPR019804	Conserved_site	Ras guanine-nucleotide exchange factor, conserved site	Interproscan
IPR036964	Homologous_superfamily	Ras guanine-nucleotide exchange factor, catalytic domain superfamily	Interproscan
IPR008937	Family	Ras-like guanine nucleotide exchange factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23113	GUANINE NUCLEOTIDE EXCHANGE FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005085	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan