Gene detail

Detailed information of Ppa0G257010 in Paragorgia papillata

Genomic Location: Contig00406:1420164...1420904
NR annotation: XP_028397484.1, uncharacterized protein LOC114521298 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8EPF5	Translation initiation factor IF-3 OS=Oceanobacillus iheyensis (strain DSM 14371 / CIP 107618 / JCM 11309 / KCTC 3954 / HTE831) OX=221109 GN=infC PE=3 SV=2
O67653	Translation initiation factor IF-3 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=infC PE=3 SV=1
Q728R6	Translation initiation factor IF-3 OS=Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough) OX=882 GN=infC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009556 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05198 all species →	IF3_N	Translation initiation factor IF-3, N-terminal domain	Domain	Interproscan
PF00707 all species →	IF3_C	Translation initiation factor IF-3, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036787 all species →	Homologous_superfamily	Translation initiation factor 3 (IF-3), N-terminal domain superfamily	Interproscan
IPR019814 all species →	Domain	Translation initiation factor 3, N-terminal	Interproscan
IPR036788 all species →	Homologous_superfamily	Translation initiation factor 3 (IF-3), C-terminal domain superfamily	Interproscan
IPR001288 all species →	Family	Translation initiation factor 3	Interproscan
IPR019815 all species →	Domain	Translation initiation factor 3, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10938 all species →	TRANSLATION INITIATION FACTOR IF-3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0032790 all species →	Biological Process	ribosome disassembly	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0070124 all species →	Biological Process	mitochondrial translational initiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02520	infC, MTIF3; translation initiation factor IF-3	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.