Gene detail

Detailed information of Ppa0G257140 in Paragorgia papillata

Genomic Location: Contig00406:1616767...1637218
NR annotation: CAB4001777.1, Shroom2-like isoform X2 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G257140

ATGGATTCAATGATGTACACAAAAGAAGAAGAATCTGTGGTCACTCTAACTGGTGGTTCACCTTGGGGTTTTACGATAAGAACTCAAGCAGGAAATGGCTATACCCGCGGACGAGTCGTTGTTGCCAAGGTTGTACAAGGTGGGAAGGCAGACAGTTCTGGGAGCATTCATGTTGGAGATGAAATTATTGCTGTGAATGGTTTTGAATTTGATAATGAACAACAGGCAACAGAATATGTTAGAGGTGCAAACAAAGAACTGATTTTGAAAGTTAAAAGAGGTCAAGACAAAAGGAGAATGAATATTAGGCTTGCGAGTGAACTGCCCAACTATTATGCTACAGCTTTAGAGTCTCCAGTTGAGAAGTCTTTATACAGGGAGTACAACACTTATACAAACATGTTTAGCAACAATGTCAACAACAAGAGATCAAGCAAGGAATATGAAAAAGATCTGAGCTATAAAGTTAGTAGTGATACAGCAAATGCTATAATTGATTATCAGAGTGGTCATTTGGGAAAAAGTATAAGACTCACCAGATCCACAACAGATTTACCTGATCATTTAAATATATCCAGAGACCAACCCTTGAAAGACAACATATCAAGATCACCTCCTAGGAAAAGCTATAATCCTCCACCTAGTCCAAACAAAGTTCAGCGAGTGCGCATACGAAGTACAAATGTTACCAGTCCAGATCACTATAAATGTTCATCTGGAAGTGACATGTCATCACCTACCATGGATGAAAATCAAAAACACTCCGAAAGTCGTTCACCAACACCTGGATACTCTGGAAGTGTCCAGAAACTATTCGTTTCCAGTGTGATGGAAGATCTGAATCGAACTTGGCCATCTGCTGCAAGCTCTGACTTTTCTAGAAAAGATATTCGTTTGGCATCACACAAAAGTCTTTCTGTCTCTGCTGCAAAATCTCATTTTGAGCAGATGTCTCAATCAAGCGAGCTCCCACACGAAATTGACAGACGACAAAAACCAAGTTCAAAATCAGCGTCTCTGGCGCCAAAACCACCGTCGCGAAACAGCTCATTTCGATCGTCTCGTCTTCCGTCCTCACCGGTGTTTCAGGACAGCGGGAGTACGAAAACCACGTCGGAGACGAAAGCCACACCCAACAGACAAAATAGCTTTTCCGACAAAGGTCGTTACTTGGCGTACGAAAAGGATGTTGATTCTGTACCTGTTCGCAAGGACAGCAGTTCGGAAGATTTAGATAAACCTCTACCACCCAAGCGTTTTAGCCAGTCTAAAGTTCTGACTTCCTTTCGTAGTAGCAAAAAGCCTGCATATCAAGCCAGCCCGACTGGTCCATCAACAGTGTACGAACACAAAGTGGAACAACAGTTGGAACGCTCGCCTGAGATTGTCTATCACCATGGGAGGACTCAGAGCCTACCATCGTCTAAGCTTGTAGCTATGCATCTTTCTTCTAAATCCTGGGTGGCAGACGACAAATCGTTAGGTTCAAAAAGTCAAGAATTTTCACGAAGCGAGCTTTTACCAAGATCTTCATCGTTCTCCCGAGCTCGAGTCGTAGAAACAAGTAGCGTGAAGAGTGTTCAGCGAGATGATTCAAAATCTTCAACAGTTACAAAAACTAAGAGCACTACTAGAAATTACCGAAGTGAAATTCAACCTGGTGTTATTCAAGCGCTGAGAACTGGAGAAATATCATCTGAAACAAAAAACAAATTGAATGGAGAATTACGATCAAAGTCGACGCCATATCTAAAGCAGGAGAGCAGTAATGAACGACAGGATACTAAAACCGAATTGTTTAAACCTGAACAATCCAAAACTGATGTTAAAAAAGCTGAGCTATATATTCCTGCATTGAAGGAAAATTCGATAATGCAGAGACTGTTGTTGGAATCACAACCTCAAGGCGAATCAAATGCACATTCTAAAATTGCCGCTGTCGAGGAGGAAATTTCACAACGTACTGGTAACGCCAAGCCTGCTGGCGGGCCAACTACTGTTGTTAAAACAGAGATTGTTGCTCCAATACAACAACAGAGGCCAATAAACGTAGCCCACAATAATGAAGTAGAAGAAAACCCGAAGTTCAAAGATCCTATTGTGACTCCCGAAGATGTAAACAAAAAGCAGAGCAAAAAAGAGGATGAAACCGCTGTTGAGGAGTCCCAACGACCACCACAAACTATGATGAACAATTCGAAGAATGACAAGCAGTCCGCAGCAAAAGTTGATCGTTGTTTAGACAAATTAATGGGTAAACTTGATTCACCTCCCGTGAATCATCGTCCATTTCCAACTGTTGTTCCTGAGAAAATTGATTCTCCTTCTTTGGTTGAGGACGATGTCTTCCATGAACCAATGAGCAATGGAACTGATCTGACAACTAACGGGGAAAGCGAGGCACAACTTGTTGAAAACAATGTTGAGAGCTCTGAAAGTGCGCCAGAAAATCCAACTTCAGGTTTGGTGATTTCAAAGAATGAAAGAAACCGCGAAATAGATAGTCCATCTCCAGAGATCATTGTCAAATCAGATGATCCTGAAGTAGTTGTAGAAAGCTGTCCTTCAACCATTTTGAAAGACGACAATGATAATATTTCAGAAAGCATTGTTCCCGAAAAGACAGAACGTCGAGTGAACGATGGAATGAAAAAAACAATCGAACTAAAAAATTGTAATAGTCAGTTGCTGTCTCCTAAAGATATACCTCTGAAGGTGATTCACAGCAGAGAAAACTCCGCGTCATCTCTTCTTGAAGAGACATTAGAGTCAGCTAAAACAATTGCAAGTATTTATTCTGTTGAACTGTCAACGCGTTGTGTTGATGGCGAGGATTCACTTAGCACTGCTAGTGAAATGCGTCGATATTCCTTGGCAAAGCGTGTAGTTAAACGAAAACCAAAAACAGAAGATGAATCTTCGTTCAACAAAAAAACAGAAGCGGGCGATCAGCTAAATCAATCGTTGTCAACACCAGAGAAAATCCAAAGCTCTTTCATTGATTCTGGTACACCTATTGATGAAAACGAGGCTGAGGGGGAGGATGAAAGCGGTAACCGATCAACTGGCTCATTGTCATCCAGCGGCAGCCGCCCTAGTAGTGGAATAATTAGCCCGAAGTTAGAAGCACTTGAAGAACAAAAGGAACTTTTAATTTCAAGTATGAAGAAGAAGGTGGAATTGCTTAAAGAACAAGAAAGTGAAATAAATGACGAAATGAAACAAAACGACGATTTAGGAAAAAGAGTGGCTCAAGATGTGAACGAGAAAACCAGTGGGACAGAATTCTCGAAATTTGAATTATTTGTAGGAGAACTTAATAATATTATTGGATTACTGTTGTCTTTAACACAACGTATGCATCGATATGAAGTGATGTTACAAGATATTGATCTTGCTGAGGAAAATGGAAGGGATAAGAGGGATATTTTGTTGAAGCGAATCGACCGAGTGAAACAACAGTACGATGAAGCTTGTAGAATAAAAGAAATTAATGACAAACGTGGTGAAACAGTAGCCAAATTCGTCGAGGAGTATTGTTCTGATGAAGAATTTGCCGATTTCCAACATTTCGTAGATATGAAGACACAACTTGCATTGACTCAGGCAGAAATACGGGATAAAATAAAACTCGGTGAAGAAAAACTGATTGCTTTAACGTCAGCGCAAATAGACTGGAGTTCTTTTGATCTCAATTCTAAATAA

Transcript

Ppa0G257140

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q09JY9	Protein Shroom2 OS=Xenopus tropicalis OX=8364 GN=shroom2 PE=2 SV=1
Q7TP36	Protein Shroom2 OS=Rattus norvegicus OX=10116 GN=Shroom2 PE=1 SV=1
Q13796	Protein Shroom2 OS=Homo sapiens OX=9606 GN=SHROOM2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002924 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF08687 all species →	ASD2	Apx/Shroom domain ASD2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027685 all species →	Family	Shroom family	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR014799 all species →	Domain	Apx/Shrm Domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15012 all species →	APICAL PROTEIN/SHROOM-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005912 all species →	Cellular Component	adherens junction	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0016324 all species →	Cellular Component	apical plasma membrane	Interproscan
GO:0030864 all species →	Cellular Component	cortical actin cytoskeleton	Interproscan
GO:0043296 all species →	Cellular Component	apical junction complex	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G257140.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.