Gene detail

Detailed information of Ppa0G258320 in Paragorgia papillata

Genomic Location: Contig00406:3725327...3748281
NR annotation: CAB4012630.1, inverted formin-2-like isoform X1 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G258320

ATGAGTGGGAAAAAGGTTTGGTCAGTTTTAAAAAGGACTGTGTCTACCAAGCGAGAAAAGAAACAGGAGACAGCGTCTTTGTCTAATGAAGCTGAACCTGAACTTTGTATTCGTCTAATAACACGACCAACTATTCAAAACTATTCTGGTATTAAGTCAAGATTACAGAAGAGCACGGTGAAATGGATGGAGGAATTCCTCAAACTTGGAGGATTGGAAGCCTTGTTTCTATCACTGGAACGATTGAGCGATAAAGATGTATCAAGTTTCATCGATGCGTTTATTCATCTAGAAGCTGTCCAATGTATCAAGGCGGTCATGAATTCAAAGGCTGGGCTTGATTACATGATAGAGAGTCAGAACTTTACTAGGACACTGGCGACAGTTCTCGACAGTCGAAATGTCATGGTAAAGAAACAAGTGTTTGAATTGTTGGCTGCATTGTGTTTGTATTCTCCCCGAGGTTATTATTTAGCATTGGATGCACTCAAGAATTATCGCACGACAAAAGGTCAGCGATATCGCTTTAGTATTGTTGTAAACGAAATGAAACATGTAGAGATCATGCCGTATGTTACAACATGTGTTGCCTTTATTAACGCTGTTATAATGTCAACAGATGATATTAAAGAGCGTGTGAGAATACGAGGCGAGTTCATAGGACTTGGAGTTTTGGACCAGTTAAATTCTTTAAAAGATGAAGAAGATGATGATTTGCTGATGCAAATTGATGTGTTTCAAGAGCAACGTCTTAATGACGACGAAGAATATGACGGCATTGATTTAAACAGTCATAGTGAAGTTTTTCAAGCGTTGTTTCAGAAGATATCAAGCAAGCCATGTGCTATCAACTTTCTCAATATTCTCCAATCGTTGCTAAATTTGGATGAAGACAATGAGCTAACGGATACAAAGTGGGAAACAATAGAAAATCTGATCTTAAGAATCTCTTTGATAGACGAATGTGAGAAAGTGAAAACGATGTTAAATGGACATTTAGGAAAAACCTTTTATCAAAAACAATCCAATGAGCCTTTGGATGATGTCTCGTCCAAAAGTGACGTCCAACGATCAAGCGATACCCAAATCCATGTGCAGAAAGTTACTCACTCACCAAACAAATCAACTTCCGTAAGAACGCCTGTAGATCATGAAACAAAGGCTTTATCAATTCACCCTGAAATGAATACATGTAACAAAGATCTTAACGTCAAATTCGACGATCAATATTCTTCTACAACTCATGAAACGCAATTTTCTACTACACCAGGCATGCCACCGCTTCATCTTGGTGCACCAACTGTACAATCGCCACCACCTCTCCTTGGTGCACCAGGCATACCACCGCCTCCTCCTCTTCCTGGTACACCAGACATACCACCGCCTCCACCTCTTCCTGGTGCGCCAGGTATACCACCACCACCGCCTCTTCCTGGTGCACCAAGCATACCATCACCACCACCTCTTCCTGGTGCACCAGGCATACCATCGTCACCGCCTCTTCCTGGTGCACCAGGCATACCACCGCCACCGCCTCTTCCTGGTGTACCAGGCATACCACCACCACCACCCCTTCCTGGTGCACCAGGCATACCACTGCCACCGCCTCTTCCTGGTGCACCAGGCATACCACTGCCACCGCCTCTTCCTGGTGCACCAAGCATACCATCGCCACCGCCTCTTCCTCGTGCACCAGGCATACCACCACCACCACCCCTTCCTGGTGCACCAGGTATACCACCACCACCACCCCTTCCTGGTGCACCAGGCATACCACCACCACCACCTCTTCCTGGTGCACCAGGCATACCACCACCACCACCCCTTCCTGGTGCACCAGGCATACCACCGCCTCCTCCTATTTCCGGAATGGGTGGTGTTCCACCGCCACCACCGGGTCTTCCAGGGGTAGGCATTCCAGCACCACCTTGTTTAGGGGCAGGCATGGTTGCCCAACGTACTGCTGCACCACCAGTTCGACCAAAGTCTAAAATGCGAACATTACAATGGGCGAAGATACCTCCACTGGTTGTGAATAAAAGCCAGAAAAATGTCTGGGCTAGAGTACGACAGTTAGCACCGATCCAAGCAAAATTCGACCTTCAGGAAGAACTATTTTGTCAGAAAAGTAAAACAACTGCCCCAAAGCAAGATGAAAAGAAGAAAAATAATCCAAAAGTGATCAGTTTGTTAGATCCCAAACAAAGTTTAAATATTAACATATTTCTTAAACAATTTAAAAGACCATTGGATGATATAATTCAAAACATCCGTGGAGGAGATAATAAAGCATTCGATGCTGACTCTTTAAAAGGATTTTTAAAGATATTGCCAGATACTTCTACAGTTGCTATGTTAAATGATTTTAAAGGCGACAAATCCAAATTGGGAAATGCAGAAAAGTTTCTCCAAGTGCTCATTACGGTACCTCATTATAAACTACGGTTAGAAGGAATGATTGCCAAAGAAGACTTCAAATCAACTGTTGACATGCTTAATGAAAGGATTGATGTCCTGTTGCATGCTACTAAAGATGTTCTAGAAAGTAATGTTCTTCCAGAGATTCTTCATCTTATTTTAACAATCGGAAATTTTATGAACTCGGGTGGTTATGCTGGTAATGCAGTGGGATTCAAAATAAATTCTTTGACGAAATTAGTTGACACAAGAGCTAATAAACCTAGGATGAATCTCATGCACTTCTTGGTTCAGGTTGCAGAAGAAAAACAGGCTCAAGTGGTTTCTTTCCCCGAAGATATGAAATATTTAGAAGACGCCGCAAAGCTCAACGTAGATAATCTTTCAGGGGAATTAAGTAATCTTCGAAAGAATCTTAATTCATTACAAGCTTCCATGGGAAATGGTGATGAAGATGTTAAAACCCAGCTTACTGTCTTTCTTCAGGGTGCTCTACAAGAGGTGGAAAATGTGGAACAAAAGCTGAAACATCTTTCCCAATTAAGACAGGATCTTGCTGTATACTTCTGCGAGGATGAAAGCAAGTTTAAATTGGAGGACATTTTAGGCATTTTTAGGACATTTTGTAATCATTTAACGAAAGCGAAAGAGGAAAACGAAACGCGGCGTAAACAAGAAGCAAAAAAAGCAGAGAGAGAGAAAAAGATGAAGGAAATGAAGAGTAAAGAAGGTAACAAAATCAAAGGAAAACCAAGGCCAATCGTCCAAGAAGAGGAATGCATCATTGATATTTTGTTAAAAGAAATAAGACAAGGCTTTCAGTTAAAAAAGCAAAAGATATCCTCGCCGAATTCGCCGCCTCAGGGTAATCAAAAGTCAAAAGCCGTATTGCAAGAGAAGGAAAACCCTTCCAATCAACCATTATCAGACATTTTGGAAGAAAATGGTGAAGCGCCGCCGCCCTTATTCACAACAATGCGGCGCTTAATCGAAGCACCGTCAGACAGAATTGTTCGAGAAACCAAACTAAAATACAACTACAGTACATCTCAATCTTAA

Transcript

Ppa0G258320

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NTV6	Inverted formin-2 OS=Xenopus laevis OX=8355 GN=inf2 PE=2 SV=1
Q0IHV1	Inverted formin-2 OS=Xenopus tropicalis OX=8364 GN=inf2 PE=2 SV=1
Q0GNC1	Inverted formin-2 OS=Mus musculus OX=10090 GN=Inf2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002138 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06346 all species →	Drf_FH1	Formin Homology Region 1	Repeat	Interproscan
PF02181 all species →	FH2	Formin Homology 2 Domain	Family	Interproscan
PF06371 all species →	Drf_GBD	Diaphanous GTPase-binding Domain	Repeat	Interproscan
PF06367 all species →	Drf_FH3	Diaphanous FH3 Domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR010472 all species →	Domain	Formin, FH3 domain	Interproscan
IPR027649 all species →	Family	Inverted formin-2	Interproscan
IPR042201 all species →	Homologous_superfamily	Formin, FH2 domain superfamily	Interproscan
IPR010473 all species →	Domain	Formin, GTPase-binding domain	Interproscan
IPR015425 all species →	Domain	Formin, FH2 domain	Interproscan
IPR014768 all species →	Domain	Rho GTPase-binding/formin homology 3 (GBD/FH3) domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46345 all species →	INVERTED FORMIN-2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0016043 all species →	Biological Process	cellular component organization	Interproscan
GO:0030036 all species →	Biological Process	actin cytoskeleton organization	Interproscan
GO:0031267 all species →	Molecular Function	small GTPase binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G258320.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.