Gene detail

Detailed information of Ppa0G258720 in Paragorgia papillata

Genomic Location: Contig00406:4402886...4406852
NR annotation: XP_028397699.1, 40S ribosomal protein S3a-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A7S3J7	Small ribosomal subunit protein eS1 OS=Nematostella vectensis OX=45351 GN=v1g242621 PE=3 SV=1
P49242	Small ribosomal subunit protein eS1 OS=Rattus norvegicus OX=10116 GN=Rps3a PE=1 SV=2
Q801S3	Small ribosomal subunit protein eS1A OS=Xenopus laevis OX=8355 GN=rps3a-a PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007928 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01015 all species →	Ribosomal_S3Ae	Ribosomal S3Ae family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001593 all species →	Family	Small ribosomal subunit protein eS1	Interproscan
IPR027500 all species →	Family	Small ribosomal subunit protein eS1, eukaryotes	Interproscan
IPR018281 all species →	Conserved_site	Small ribosomal subunit protein eS1, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11830 all species →	40S RIBOSOMAL PROTEIN S3A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02984	RP-S3Ae, RPS3A; small subunit ribosomal protein S3Ae	-	Ribosome	ko03011	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.