Gene detail

Detailed information of Ppa0G260510 in Paragorgia papillata

Genomic Location: Contig00406:7833232...7863369
NR annotation: CAB3991982.1, Host cell factor 1 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G260510

ATGGCGGCGCCCATGAAGTGGAAACGTATATCAAGTTCTGCAGGTCCTCTACCTCGTCCACGTCATGGACACCGAGCTGTAGCTATTAGGGAACTGATGGTAGTATTCGGTGGTGGAAACGAGGGAATCGTAGACGAACTTCATGTGTATAACACAGCCACTAACCAATGGTTTGTACCCGCTGTACGCGGTGATATTCCGTCCGGATGTGCTGCTTATGGCTTCGTGTGCGATGGAACGAAACTTTTTGTTTTCGGAGGAATGTTAGAATATGGAAAATACTCGAATGAGCTGTATGAACTCCAAGCAACTCGTTGGGAATGGAAAAATTTAAAACCAAAGCCTGCAAAAGGAGGATCAATTCCATGTGCTAGACTGGGTCATAGTTTTACTTTGATTGGTCATAAAGCATACTTATTTGGTGGCCTAGCTAACGACAGTGAAGATCCAAAGAGTAATATTCCAAGGTATTTAAATGACCTTTATATATTGGATTTGAAGAATTCTCACAATCTTCAGTGGGAAATCCCAAACCAGCAAGGTTCCATTCCTTCACCAAGGGAGTCCCATACCTGTGTTCCATTCACAAAGTCTGAGGGGAAACATCAACTTATTATTTATGGTGGAATGAGTGGATGTCGACTTGGAGATCTCTACCAACTAAATATTGAAACAATGATGTGGACAAGACCTGAAGTTACTGGTAATATTCCTCTACCAAGAAGTTTACATTCAGCAACTATAATGGGCAGAAGAATGTTTGTTTTTGGTGGCTGGGTCCCTCTTCTCCTGGATGAAGTAAAAGGAACTCAACACGAAAAGGAATGGAAATGTACAAACACATTGGCTAGCTTAAATTTAGATACTATGAACTGGGAAGATGTTGTGATTGATGGTTCTGAAGAGAATCTACCAAGACCAAGAGCAGGACACTGTGCTGTTGGGATAAGCAAGCGACTGTATTTGTGGAGTGGAAGAGATGGATACAGAAAGGCTTGGAATAACCAGGTGTGTTGTAAAGACTTGTGGTTCTTAGAGACTGACAAACCCCCATCACCAACCCGTGTTCAACTAGTTCGAGCGAGCACAAATACACTGGAGGTTTGTTGGGGTCGTGTGGCAACAGCCGAGTCGTATTTGCTTCAAGTGCAAAAGTATGAGGTTCCAAGTTCCAATTCGCCAACTACTGCTGGCGCTAAAGTGCCGAATGTTAAAGCCAGTCCTACAGCAATAACAGCACCCCGATTGTCCATAAGCATGCCTCCTAAATCAAACTTGCAAACTCTCACAAAGAAAACTCCGATACCAGCTTCATCTGTCACTCCACCTCTGAAGACGCCACCTGTCGCTGGAGCTTCTTCAACTCCTCAGATAGTTTCTTCAACTTCTAGTCCAACACAGGGTCAAGCAGTTACATTAATTAGAAGTCCAATGGGCTTGTCAAATACTGTCCATGGTAATATCGTCACAAATTCACAAGGTATTTCTGTTCTTCGAGTTCAGACTACTCAACAAGGAGCTACCTCTACTTCCAGCTTGCTGCAGTTAGTTGCTTCTAATGCTTCTGGTGGCAAAGAACGATTTACTGTCGTTCCTACGACAAAACCCACTTATACTGGCTCGACTGTAACGTCAAGCACTGTTAGTAAATCCGTTACAAGTAGTCAACCTGCTACAGTTACTCCTGCAGTGACATGTTCGAGTACTAAAATTACGTCTAAGCCGCAACAAATAGTTATGGTGATGTCTCCAGTTACATCAAATACGGGTGAAGGAGGGAAAGTTACATTTGCCACCACCACTCAGGCCATGTCCCTTGCACAAGGACATAAGAGCTATACTGCTGCTGGACTTAATCAAATTCTTCAACTGTCCCAGCAAGGCACAGCATTAAAGATAGTCACAATGGCTGGCCAAGCGTCGTCGTCCACTGGTGCACCTCTGCAAACACAAGCTGGATTGAAAATTGCACAGCCAGTTCGATTAGCGAATGGTCAGGTTGTTCTTCAAATGTTGGCTACTGCGCCGTCAACGCCAGTAACATCTTCTACTGTCTCGTCATCGTCCTCTTCACTGCAAAGCACCACGCAAGCTCAACCTCAAGGGGAGAATAAAACACAAGTTACTCAATCTTCAGCTCCGTCTACAGTTGTTACCTCAACTGCTAGTGAAGACAAAACCAGTGGCGTCGCATCCGGTACCCTCGTGTCAGCTTGTACCGCTCCTGTTGTATCATCAAAAGTTGCAGCCAAGGCAATACAATCTGTGTCTTTAACCACACCGTCAGTTACTAGTACATCGTCGAACAATACCGCGACAACACTAAATACATCCACGAAGAATGAAGCTGACACCTCATTGCCTTCATCTCAGGTCACCACTAAACCGACCTCCAATGAAGCTTCGACCACCTTGACTTCCACTGTTTCTTCCGTTACAACTTCCACCAAACCTAGTGTGACCAGTGCCCAATCAACACAAGGCTTATCACAGGCTCGGGAAAATCAACATGCTAATGCTTCTACAGCCGCAGTTCAGGGCAGTACTTTATCGCAATCTTCTACAACTACGTCTGTTACTATCGCTGATACTACTGTTAACTCCTCGGCTGTTACCAGCGTTGCTTCCTCCACAACGCCATCCATGTCTTCTTCAGAAACCTCCAGCAGCTCAGTATCTGGTACCGTTACTCCCAGTACAGTGCTCACCACAACAAAATCCTCGGTTATTTCCAGTGAAAAGAAAGCAAGCACTGAAGTTGTGTCAAAAATAACACCATTGTCGACTCCTTCGGCAACTAGCTCTGTTAGTACAACTAGCTCTCCAAACGTTACTGCGAGTTCTACAACAAAACTCGCTTCAACGGTTCCAGTAAGTCAAGTTCCAGTTACTCAAAGTAACCAATCAGTTTCGTTGAAAGAAGCTGTTTCTTCACAAGGGAAAATACTCGCACCTTTGACACGAAGCTTGCTAAGTGCTGCTGTTAGTACGCCAGTATCGTCAATCCGTCAACCACGTGCTAATGGTGTCCATGGTAACAAACTTATCTTAAGCCAATGGCACGATGTCGGTATGATCAAAGGAACGTCTACAACTGTTTCTCATTATTTTATTCGACGACAGGAAGACGACCAAAAGAACTCGAGTGAAAATATAAGCGCAACAGGTGTAAAACAAGACCTTCTTCCTGGTACAGCATACAAGTTTCGTGTTGCAGGAATCAATTCCTGCGGACGTGGACCATTCAGTGACGTCTCAGCTTTCAAGACTTGTCTTCCAGGTTTTCCGGGTGCTCCATCAGCTATCAAGATTAGTAAGAATACTGAAGGTGCTCATTTGTCTTGGGAAGCGCCTACCAATGTGGCTGGGAATGTGAATGAATATTCCGTATACTTGGCAATTCACAGTCAAGCAACCGATAATAAAGAAGTCAGTGGTGTTGGTCCAACACCAGTTCAACTGGCATTCGTTCGTGTCTATTGTGGTCCCAAACCATCGTGTACTGTTAATACTGATACTTTGAAAAACGCTCACATCGACTACTCTACAAAACCTGCTATCATTTTTCGTATTGCAGCAAAGAACGACAAAGGGTATGGCCCTGCTACACAAGTCAGATGGCTGCAAGATGCTAAAGACTTGAAGGATCCAAATATTACAAGAAATGCTGCCCCCAAACGAAATAATATAGACAGGTTTCCAAAGCAAAACTGTCGAGATGAAGCAGCAAAAGTCGAAAAATTTCAAGTAATAGATCAAACATGCACGAGTTTGAGTGTTTCATCAGGGGTTCTAAACACAAAAAAAACAAATGAAAACCGAAGGCGTAGCCCCGGTTTTTTCCCCTTGTTTTCGAGTTCTCTGATGAAACACGATAAACGAGTGTTTGATCTTGCTTCTCAAACGAGTATTCGCATCCCGATTTGCGGTGTTTTCTTCATTGATTTCAATATGCAGATTAAGAAATGTGATCCAGTTCACTAG

Transcript

Ppa0G260510

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9V4C8	Host cell factor OS=Drosophila melanogaster OX=7227 GN=Hcf PE=1 SV=2
Q9Y5Z7	Host cell factor 2 OS=Homo sapiens OX=9606 GN=HCFC2 PE=1 SV=1
D3ZN95	Host cell factor 1 OS=Rattus norvegicus OX=10116 GN=Hcfc1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004526 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan
PF13854 all species →	Kelch_5	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR003961 all species →	Domain	Fibronectin type III	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR043536 all species →	Family	Host cell factor	Interproscan
IPR036116 all species →	Homologous_superfamily	Fibronectin type III superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46003 all species →	HOST CELL FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0035097 all species →	Cellular Component	histone methyltransferase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G260510.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.