Gene detail

Detailed information of Ppa0G266650 in Paragorgia papillata

Genomic Location: Contig00418:56541...73557
NR annotation: XP_028391025.1, LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-A-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G266650

ATGTCAAACGAGGAAAATACTTTGAAGTTTGTGCGAAGTGATGGGTCCGAATCTGATGATGGAGAATTGCTTCAAAAGGCTTTTGATAAAGCCAAATCTGCTGACTTTCATGTACAAATGCTTTCAGCTACGGAACTTCTGAAGCAAGATTTGGGCAATGATAAATCTTTGTTTGTTTTGGACGAATTCAGCGGGGAATGTTTTGAGTTTTTATTGGCCCAGAAAAAGAGGATTTTTGGCCCAATTTGTATAATGCAGTGCCTTGAGAAAATGATTCCAGCCCCAAATGTTTATCACCCGGTCTATAGCTTGGCCATGCATGGTGTAGCTGTGTCTTGTACAAGTATTTCCAAGGCAGTAAGAGAAAGGGTTTATCAGTTAGTGCAACGCATGGGAGGAGTTATTCTGAAAGATTTTACAAGTGCTGTGACTCATCTGGTTACTAAAGAAGTTGGAAGCAAAAAGTACGCAATTGCTTGTGATTTAAACAAAGTGATTGTGCTACCATCGTGGGTGGAAGAAACATGGTCAAAGACCCAGCGATGCAACTTTGATGCAAAAGACTCGAGCTTCGTTGCTGCGTATCTGTGCCCAATATTTAAAGGCTGTATGATTTGCGTGTCAGGTGTTCAGGCTGATAGACGCAAAGAGATTCAAAGTGCAGTTGAGGAACATGGTGGGGAATATTCAGCTGAACTACGAATGAACTCGACTACTCATTTACTGGTGGAAAAACCAACGGGGCAAAAATACGAGTTTGCGTCACGATGGAATAAGCATTGTGTTCATCCGAAATGGCTGTTTGACTGCATCGAGGCTGGACATTGGCTTAGTGAATCTAGTTACGTAGTAAAAGATGAAAGAGACTTGGACAAAACTGGTTCAACTGCAAGCCGGTTAAGTGTAGGTACCACATCCAAGAAAGCCGCTGAAGCTGCTCAGAAAAGTGCTGAAGCACATGGACAGAAACATATATTCAATGAATCCAGAAAGTCTTCTACAGCCAACCATGGTTCAAGACAAACTGTTAAATCTGTACACGATGAATGTGAATGGGATTATAAAAGTCCAATGCCATGTGGGGAACTGTTTCTCGATGGATGTAAGATTTATTTGTCAGGCTTTGCTGGAAGAAAGCTCGAGCATCTTCAGAGAATAATCAATGCTGGTGGAGCGACTAGATTTAATCAACTAAACGCCAGTGTTTCTCATGTGGTTATGGGAGAGAAGCTAGAGAACGAGATTGAAAAGTTAGGCAAGTCAGAGTTTCCACCTCACATAGTTACTGCAAAGTGGTTGTTGGATTGTTGCCATCAAGTCAAGTGCCTTCCTGAACAAGGTTACTATTGCATGGAAACAAATTATGTATTTGATGACATTATTGTAAGACCATTTGATGAAAGTAAAAAGGGCAAGAAACAACAAGTTGACAAGCCTACAACAAATAAAGAAAATCTTGTTGCTAATGATGATGTGTTAAGTCATTATCTTGACTTAATGAATGATGATGATTTACCAATAATGATTGAACTAGAACCAAATGCTGGATTGGAAACTGATAAGAAGTCATTGCCGGAAGTAAATAAACCTGAGAAGGAAGCAGACATTGGACAGGGATGGGGATGGGATGAGGACAAGGATGGGGGTGGGGGTGAGGACAGGGATGAGGATGGAGATGATGACAGGGATGGGGATAGATATAAGGATGGAGATGGGGATGAAGTTGAGGATGGGGATGGGGATGGAGATAAGGATGGGGATGAGCACAGGGATGGGGATAGACATAAGGACAGGGATGGAGATCTTTTTCATGGTTTAACAATTCAAATCAAAGGATTTACCAAAGACACAGAAACTCAGTTTAAGAAAGTTATTGAAAGTAAGAGTGGTGTTGTTTTGAAAGAGACATCAACAAAACTTGCTGATTATCTTGTGTTACCAATGGATTATGAGAGTGATGATGACAAGGCTGTATCTTTGGTAACATACTGCTGGCTGGAGCGAAGTATAGAGTGTGGACAACTCTTGGATCCTGGCAGCAACTTTCTTTTTACTCCATTTTCTCTTGCCAAGAACACTTTCCCCCTCAAAGATTGTGTCATTTCAATCAGTCAGTATGTAGGTGTTGAAAGAGATCATTTAATTCAGTTAGCAAAGATGTTAGGTGCTCACTACCAAGAATTCTTTTCACGTACAACTCGAGCCGACTTTTTAGGAAACACACATCTTCTCCTCCAAGAGCCGACTGGATCCAAGTACAATGCAGCCATTCACTGGAATATTCCAGCCGTAAGCGCTAATTGGCTGTTCGAGTGCGCGTGTAGTGGGACCAAGCTTGCAGAAGAACCATTCAGAATCGACAAGGAGCAGTCTGAAGGGACGGAAGAAGAGGAGATTGATACGGTCGGAGAAAAGACCTCTACCTCTGAGGAGTTTCGTGTGCCTGAAAGGAGTGGTAGTAAGAGTGAACTAGGGCGAGCGAATGTGCCTGAGTTGGAGGAAACCAAGGATGAAATGAAGGCCCCATTGGACAAGGCCACGGATGCAGAAGTCTCTATGCCAGCAAGTGCTCATCCATTTATCAACAAACCTCCTGCTTATTTTGGTCGACCTAAAAGACCTTCGTTTGATTTGACAGACGCTTTTGAAGTACTTCAGTCGCCATGTTGTTCATCTGGTAGCGGCAGCAGTAGCGCTCACAGTCGATTGAGCCGTAGCAGCAGAAGTAGTTTCTTACTTGATGATTATATTCAGGAACATATGCAAGCAGCTTTGAAGCACACTGGATGCCAACTTGGACCTCGTGTCGATGGTTTGGAACAAGCATCTATGAATAAGACCGACAAAGAGAACAAAGACCAAGAACGTCAATCATTTCTTTGTGGTGTGATTCTTCATGTCAGTAAGAAGTTGACAAAGCAGCAAATTGATATTCACAACATGGCGTCTGCCGTTGGAGCTGATTGCAGGTGGAGTTTGGATGACTCATGCACTCATGTCATTCATGAGGGTCGTATCACTAAAGAACAGAGCCAAGCAAAATCTAAGGGAGTTCATATTGTATCTCCTCACTGGGTCTATTCTTGTATAGAGGAGCAACGTCGTGTTGACGAAAGCTTGTACCCATCTATGTTCAATCCTAAACTAACGTTACCTGTGGTGAAAACAAGAAGATCTGCCAGAGATTTAACGGAGAACGTAAGCGAACCTGAAGAAACTGGCAACGTAAGCAAACGTGAAGAAACTGGCGTTGGCCCAGAAAAGACGAAAGATACAAGCGTTGAATCTAAACTGTGTCAAGAAGCTGGTATCGAACCTGCTGGATTGTCAACAACAGAAATAAATGTTGAACCTGAACCTGCGACGAAGTCTGTGATAGATGATCTGAAGAAACCTGAAGTGGAAACTAATATGCTTAGCCAAGATTCTGCGCAGAGTGATTCACTTCGAACGAAAGAAGAAATCAGACAAATTCACGGAATTATGCAAGCCATGAAGTCGACCCGACGGCGCAGCAGACGTTTAAATTGCAGTAATTCTGGCAGCAATTCAAGAAATTCATCTGGTAATGGGGGATCATCGAGAAAAATGACACGAAGACACTCATCTCGTCTACGCTCTTTACGCTCTGGGCAGGACAGTAGCGAAGACGAGGGTAATCAGCAACCAGTGGATACGATTACTTACGATGATCCAAAAAGTAGAATTGAAAGAGAAAAAATTATAGCGCGACTGGAAAAGTACAGTCCAACTCCAGTCACAGAGAGCGAACATAGTGATGAAAACGATGAAACTATTGTTAAGTGTAAAAGCGAAACCAGTACGACAGAAGACGAGAGGAACCCAACCACAGTTGTCAAAACTGAAGCACCATCCCCTTCCTCTCCAACCCCAACCCCAGATGCTCCACCCATCGCTCTACACATAGCGTCAACGTCACGAATGCCTGAGCCAGTAAGCCTACTCGATCCAGCAGTTGAACTTGAAAACATCAGACCACAACAAACTCGGAAATTTTTATTATCTGGTATGTCGTCCCAGCAAGAGAAGATTGACTATGGAGCTTTGATAGAAGAACTTGGTGGGGAGCTGTTTGATAATAAATATTTCAACCCAGTATGTTGTCATATTATTGTCGGACAAATTAACAGAAATGAGAAATGTTTAGCTTCCATCGCCGCTGGAATCTGGGTGCTGCACAAATCTTATTTGGAAGCAAGTCGTTTGGCTGGACATTTTGTAGACGAAGAAGATCACGAATGGGGCGTAGAAATACCTGGAGTACCATTAAATAATTTAGCCTGTGCTGCAAAAAAATGGAGAATGGAGTTAAGAAAGAAATCACAACAACATAACGCTCAAGTTGGCGCCTTTCAAAACTGGAAGATATTACTTTGTGTTGAAGAGGGCAAAGCATCTTCCTTTGCAAGACTTTTAGAAGCTGGAGGCGCAAAAGTCGTAGGAACCAAACCTCCCTTTCATGACATCACTGGTGTTACTCATACTTTTATCAGTCCTGGCAAGTCGTCTCTTGTGCAAAGCGTCGACTTTGAGCGTCTTCAGAAAGCAAAAATACTCGTGCTAAAAACGGAATACATTGCGGATTACCTTACGAAGAATCCTCTGCCGTCCGTAGACAAGTACCTTGTCGAAAAATCTCAAGAACGACTGAAATTGGCCAACAGGAAAAGAAAGCAGGACGAAAGCACGTCGGAGACAACAGAGAAACGTTTCAAGAGATCTTAA

Transcript

Ppa0G266650

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q92547	DNA topoisomerase 2-binding protein 1 OS=Homo sapiens OX=9606 GN=TOPBP1 PE=1 SV=3
Q800K6	DNA topoisomerase 2-binding protein 1-A OS=Xenopus laevis OX=8355 GN=topbp1-A PE=1 SV=2
Q6ZQF0	DNA topoisomerase 2-binding protein 1 OS=Mus musculus OX=10090 GN=Topbp1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004195 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00533 all species →	BRCT	BRCA1 C Terminus (BRCT) domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR049936 all species →	Domain	DNA topoisomerase 2-binding protein 1, eighth BRCT domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13561 all species →	DNA REPLICATION REGULATOR DPB11-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006270 all species →	Biological Process	DNA replication initiation	Interproscan
GO:0007095 all species →	Biological Process	mitotic G2 DNA damage checkpoint signaling	Interproscan
GO:0033314 all species →	Biological Process	mitotic DNA replication checkpoint signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10728	TOPBP1; topoisomerase (DNA) II binding protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.