Gene detail

Detailed information of Ppa0G266980 in Paragorgia papillata

Genomic Location: Contig00418:424514...430194
NR annotation: CAB3978392.1, DNA cross-link repair 1A [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G266980

ATGGAGGACACAAGTGACGAAAGTTTGCTTGAAGATATGACGGAATTTCAGCCGATCAAAAGGAGTAAAACTAGCCGAGGTCTCGCCAAACGTTGTGGATCGCCTCAAGGAAAAAAACTGAAAGGCAAAAGGGGTTTATTTCTGTCGCTGAAGTCCACACGACTCAAAAACAATGGAAATGATTCGAGTGAATTTCTTGAAAAGCAGAGAGGAGAGAAGGTTGAGAGAGATCAGTCAGGATTTTGTCCTGTTTGTCAAGTTCCATTTACTGGACTGGTTGGATTCTCATCGCAGGGTCATGTGCAAGAGTGTTTAGAAAATAGAATTGAATCTTCTGAGCAATGTCATGAAGGCATCAACTGCAACTCTATCAATCCTTGGCACTTCAAGAAATTTTCACACCAGCAACTTGCAAAATCACGCAGCATAAAACATCTCAACCAATCAATTGATGAATGCAAAATTGAGGACAACCTCTCTCCACGTTGTGAAAAGGATAATTGCTTAAAGAATACAGAGAGCTCAACTTCTGTGAACAACGATCTTAACCAGAGTCCAGCTGGTACTTGTAGCTTATTTAAAACAACCGACAGCTGTGCAGCTGGACAAAAAGTGTCAATGAGTACGAATAATATGGACAATGTCATGGGAACTGCTGTAGAATTACCAGTCAAAGAAAATTTAGTTGATCATGAGTGTACTGATGAGATAAGCCAGTGGCTGAATGATGATTTTAAATACGAAGATTTTGAACTCAATGGTATTATTGAATGTACTGCAAGCAGTACAAATGATTCAGATACAAATTATTCAAGTAATATCTGCACTTCATCACAAGACACAAGAACGTTGACTAACAGTCTATCATCAAAGGATTGTGTCAATTTTGGAAAAAGTATTGAGACAAACCTCTTTAATGGAAATAAGAAACAAACTTTGAATAATACTAATATGAAACAGATGGATATTGGAGTGTTTTTTGGCTTGAAACCAAAAAAAGATGCACTGCCAGATAATAAAACAATTAGGATTTCCATGGAAAATTTTCCAAAAACATTGACAAGTACCCAGAAAGAGAGACAACATGGTGGAAGGAGCCAAAACAGGAAATGTCCATTTTATAAAATAGTTGATGGAACCTCATTTGCTGTAGATGCATTTTCCTATGGAAATGTTCCAGGAATCTCAGCATATTTTTTGAGTCATTTTCATTACGACCACTATGGTGGACTGAATAGAAAATTTTCTAATCCAATTTATTGCAGTCAGATAACAGCCAACTTAATATTATTGAAAATCAAAGTGGCATCTAGATTTATACACCCACTGCCATTAAACAAACCCGTCAACATTCAAAATGTAGAAGTGACTTTGCTGGAAGCAAATCACTGTCCAGGAGCTGTGATGTTTATATTTAAATTACCAAGTGGAAAAACCCATCTTCACACAGGAGACTTCAGAGCATCACCCTTAATGGAAGTGGACCCATTTCTTTCCCATTGCTCAATTCACACATTGTATTTGGATACCACTTATTGTGATCCAGATTACAACTTTCCTCCCCAGTCAGACACAATTGATTACTGTGTTTCATTGGTTAGTGCAACTGTTGCAAAAAACTGCAAGACATTAATAGTTGTTGGTGCATACACAATTGGGAAAGAGAACATTTTTACTGCTGTGGCAGATGCCTTGCAATGCAAAGTTGGTGTTCGACGAGATAAATACAATGTTCTACAGTGTTTAGAATCCCAACATCTGAAGCAAGTAATTACACAAAATTACAAGGATGCCCAAGTCCATGTACTTCCAATGGGCGATCTTACACACAAGAGACTTGCTCTTCATCTAAAGGACTACAATTCCCGTTACTCAGAGATTTTAGCTATCAAGCCAACTGGGTGGACATTTACAGACTCGTGTGATAGTAGTTTAACAAATATTAAGCCTTCAAAAAGAGGAGATGTGACAGTCTATGGTGTACCATACAGTGAACACAGCAGTTATAATGAATTAGAAGAGTTTGTCAAATTCTTAAAACCATACAAAATTATACCAACTGTAAATAATGGCTCTGCTACAAAAAGGGATGAAATGAATAAGTTGTTCAGAACTTGGCTCAAAAAATGA

Transcript

Ppa0G266980

Protein

Uniprot

Uniprot term	Description
Q5QJC4	DNA cross-link repair 1A protein OS=Gallus gallus OX=9031 GN=DCLRE1A PE=1 SV=1
Q38961	DNA cross-link repair protein SNM1 OS=Arabidopsis thaliana OX=3702 GN=SNM1 PE=2 SV=1
Q9JIC3	DNA cross-link repair 1A protein OS=Mus musculus OX=10090 GN=Dclre1a PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07522	DRMBL	DNA repair metallo-beta-lactamase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036866	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR001279	Domain	Metallo-beta-lactamase	Interproscan
IPR011084	Domain	DNA repair metallo-beta-lactamase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23240	DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003684	Molecular Function	damaged DNA binding	Interproscan
GO:0006303	Biological Process	double-strand break repair via nonhomologous end joining	Interproscan
GO:0035312	Molecular Function	5'-3' DNA exonuclease activity	Interproscan
GO:0036297	Biological Process	interstrand cross-link repair	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15340	DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein	-	DNA repair and recombination proteins	ko03400	deepkoala