Gene detail

Detailed information of Ppa0G267500 in Paragorgia papillata

Genomic Location: Contig00418:1144586...1149257
NR annotation: CAB3978535.1, nucleolar 56-like [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SZ63	Nucleolar protein 56 OS=Bos taurus OX=9913 GN=NOP56 PE=2 SV=1
Q9D6Z1	Nucleolar protein 56 OS=Mus musculus OX=10090 GN=Nop56 PE=1 SV=2
O00567	Nucleolar protein 56 OS=Homo sapiens OX=9606 GN=NOP56 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002002 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01798 all species →	Nop	snoRNA binding domain, fibrillarin	Family	Interproscan
PF08156 all species →	NOP5NT	NOP5NT (NUC127) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002687 all species →	Domain	Nop domain	Interproscan
IPR042239 all species →	Homologous_superfamily	Nop, C-terminal domain	Interproscan
IPR012974 all species →	Domain	Nucleolar protein 58/56, N-terminal	Interproscan
IPR012976 all species →	Domain	NOSIC	Interproscan
IPR045056 all species →	Family	Nucleolar protein Nop56/Nop58	Interproscan
IPR036070 all species →	Homologous_superfamily	Nop domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10894 all species →	NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030515 all species →	Molecular Function	snoRNA binding	Interproscan
GO:0031428 all species →	Cellular Component	box C/D methylation guide snoRNP complex	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14564	NOP56; nucleolar protein 56	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.