Gene detail

Detailed information of Ppa0G268120 in Paragorgia papillata

Genomic Location: Contig00420:99373...103887
NR annotation: CAB4006407.1, metal transporter CNNM4-like [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G268120

ATGGCCGTCGCCGTCGGTTGCCTGTCGAAGCATTTGTTGATGTATTATCTCATTTTATGTATCTTGCTGGCTTGTAAATTACATTGTGTAAACTCACTTCTTTCGGAGCCTCAGCTATTAGCGTTATTTCCTAAAGAAAGCGACAAAAACACTAGGATATCGGCTGGGATAGTCGAAATTTCTGTCGATGTCTCGACGCAATTAAGATTGACTGGTGTGGGCTTGTCCGAGGACACGTCTCTTGTGTTTACCCAAACTGCGGCCAAGAAAGGATCTTCTTGCGATACGTTTGCCAGGAGTGAAGCTTTTGAACTATCGAAAAGCACGACTGGAGTGTTTGAAGTAGAGGTGACCAACTGGAAAATATTACGTATTGCTTGCCAAGGGAGGCCTTCCTGTTTGGTTCAAGTCATGTCTTCTCATTTTACTGCTTATGATGTCAGGGCGGCACGACTGAATGTTGTGACGATTAAAGTGCTTGCCAAGGGAGGCCTTCCTGTTTGGTTCAAGTCATGTCTTCTCATTTTACTGCTTATGATGTCAGGGCTTTTCTCTGGTCTTAATTTAGGCCTGATGGCTTTAGACCCCACTGAATTGAAAGTTGTTGCAAATTGTGGTAACCCAAAAGAGCAAAATTATGCCAAAAAAATACTACCAATTCGATGCCATGGGAACTACTTACTGTGTACATTGCTTTTAGGAAACGTGCTTGTCAATAGCTCGTTGACCATTCTATTGGATAGTTTAATTGGTAGTGGGATAATTGCTGTGGTAGCATCACTTGTTTGCTCCAGACATGGTTTAGCAATCGGTTCAAGAACACTTTGGCTTACCAAGCTTTTTATGCTTTTAACATTCCCAATATCATACCCTATTAGTAAGATCCTCGATCTCATTCTTGGTGAAGAACTCGGCACGATTTACAACAGAAAACAACTACTAGAAATGATTAAGGTTACCGCTGAACACAATGACCTCGCCGGGGATGAGATGAACATTATTTCAGGGGTTTTAAACTATAAAACAAAATGTGTGGAACAGATCATGACTAAGATTGATTCTTGCTTCATGCTTGATTCAGAAATGGCTTTAGATTTTAAAACTATTACGATGATTATGGAATCTGGTCATAGTCGTATTCCAGTGTATAGTAAAGAACGACATAATATTGTTGGCTTATTGTTTGTAAAAGATCTTGCTTTTGTTGACCCTGATGATTGCATACCCTTGGAAACTGTCATGAAGTATTACAGTCGTCCTGTGGATTTCGTTTGGGATGACACTAATCTTGGAGATTTATTAGAGTCTTTTAAAGAGAAACATTCGCATATTGCAATAGTTCAGAGAGTGAACAGTGAAGGGTCTGGTGATCCGTATTATGAAGCTGTGGGATTAGCCACTTTGGAAGATGTTATAGAAGAAATTATTCAATCTGAAATTGTAGATGAAACAGACAAATACAACAAATCAAAGACATCTCTCTCACCACAATTGCAGCTTGCGGCATTTCAGTATTTGTCAACAGCTGTTGAAGCATTCAGCGATGAAAAAATTGCAGCAAGTGTTTTGAAACAACTTCTCAAACGCAAGGATGTTGTTATTGAAATCGAGCTAAAGGATGCTAAACAAGACTCGCTTGTATTGTATGAGAAAGGAAAGCCCGCCAGCTGTTTTTTCATGGTAATTCAAGGTCAGGTTGATGTTACAGTTGGCATGGAAGGCTTTACATTCAGTCATGGAGCTTTTTCGTGCTTCGGTCAAGATATATTGCTCTCAAACAATGCCGTGGAATATATTCCTGATTACACAGTTAAAGTAAGCAGTGATTCTATGCTTATCAAGGTCACCACTGAAATTTACAAACAAGCTTTACACTCTACAGAACTCAAGAAATTGGAGCCCGAAGAAGAAAGTGGCTACTTCAATGCAGGTACATGCAATGATGCCTTTGATACAAATTCCAGTGAAGATGATACACTCAGTCATTCACCAATGATAGGAAGGACTAAAAATGAGTACCATGTCTGA

Transcript

Ppa0G268120

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0JPA0	Metal transporter CNNM4 OS=Xenopus tropicalis OX=8364 GN=cnnm4 PE=2 SV=1
P0C588	Metal transporter CNNM4 OS=Rattus norvegicus OX=10116 GN=Cnnm4 PE=1 SV=1
Q5U2P1	Metal transporter CNNM2 OS=Rattus norvegicus OX=10116 GN=Cnnm2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001932 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00571 all species →	CBS	CBS domain	Domain	Interproscan
PF01595 all species →	CNNM	Cyclin M transmembrane N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002550 all species →	Domain	CNNM, transmembrane domain	Interproscan
IPR000595 all species →	Domain	Cyclic nucleotide-binding domain	Interproscan
IPR045095 all species →	Family	Ancient conserved domain protein family	Interproscan
IPR000644 all species →	Domain	CBS domain	Interproscan
IPR018490 all species →	Homologous_superfamily	Cyclic nucleotide-binding domain superfamily	Interproscan
IPR046342 all species →	Homologous_superfamily	CBS domain superfamily	Interproscan
IPR044751 all species →	Domain	Ion transporter-like, CBS domain	Interproscan
IPR014710 all species →	Homologous_superfamily	RmlC-like jelly roll fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12064 all species →	METAL TRANSPORTER CNNM	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0010960 all species →	Biological Process	magnesium ion homeostasis	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0030026 all species →	Biological Process	intracellular manganese ion homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16302	CNNM; metal transporter CNNM	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.