Gene detail

Detailed information of Ppa0G269370 in Paragorgia papillata

Genomic Location: Contig00422:211456...231886
NR annotation: XP_028414048.1, uncharacterized protein LOC114537111 isoform X2 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G269370

ATGGAAGGGAATAACAAGGCATCAGAAGACCAATCTTCTGAAGAGTCGCACGATTTGAAGCTTCTCATTGAATGTCTTAAACTTGATGTCAGTTACCAAGAGGAAGCCTTGAAAACAATGGCTTCTTTGTGTCATACTAGTGATGCTGCTTCGGGTTATCTTGTTCACTCAGATGCTTTGCAGTACATTTTAAAGATTATCTTCAAACCTATCAGTCCACTCTCCCTCAAAGTAGCATGTCTGCATGTACTGTGTGCTGCATGTGAAAATAATGCTCTTGTCCAGAATGTTTTGTGCAAAGAAAATATCTTTCAGATGCTAAAAAAATTCCTGACAATGAAATCACATACAAAATTGCAAACGCTTTCTGCTTATTTAGTAATTTATTTGGTCTCAAATAATGAGAGAGGTCAAGTTCTGGTAAGAACGAGCAAAACACTTGAGACTTTGCGTTATATATTTAAGGACGTATGTTCTCCGACATGCTCTCCTTCTAATCCAAAAAGAATGTTAGAATGTTTAGCTGCTGACTCCGAAGGAAAAACTGAATTGATAAATTTTTGGCAAACTGCGACTAATGCACTCTCTGTTTGTGTTAATAACCCACAGAATAAAGAGAATCAGTTTTATTGCTCTTCAGTATTTCCAGCTGCAGTGGCCTATCTCAGGAACTCTCAGTCTTCATTAATACAAACAACTACGCTGAGTTTTATTACAAATTGTTTGGCAAACAACAATCGTGCCCAAGTAAGCTTTCGTTTAGTTGGTGGTTTGCGAGTGTTGTGTGACGTCATGAGAGAAGAGTTATCTGCTGGTAACCAAGTACCATCGCCAGTTATGAGTACCCTAGTGATGACTTTAGAGGCAGCCGTGCGTCGAAATCAAATGTGTCGAAGTTCTACGGCTGAACTAGAGATCATACCTCTTCTTCTGCAATGTCTTCAACTTTGCTTTGGAACGCCGAAATTTAAAGTGGGGTGTTTGATGACAATCGCTTCTTGTATCGAAGAATGTGCTTCCAACTGCGAGGCGTTTTTATTAAACGAAGGGATGGCCATTGTAATAAAACTGCTGGCTGAAAACCAGAATTGTGAAGAGTTGCAAAAAACAGCTACGTGTGTCTTACAAACCTACATGGAGCAAACAAAAACCACTGATTTCAAGTTTGAAATACTAACTTCGAAAGGCCTTCATGTGAGCCAGGATTCTCTAAACGATTGTCATAAATCAGTAGCCCAGATTGAGAAACCTAATAATTGTAGTACATCAAGTGCTTTGGTTGAAGCTAATGGTGAATGTACTAACGTGACTAAAGCCACACAGAATGATAATACATGTGATGATCAATCTGCAGGGAGCATGGTTAATCAAATTAAGGATTTAACTGATGAAGTTTGCGGTTTGAAACAACTTGTCACAGATAATGGGAATAATAACAGTTCATTTATAGCAAGTGACGTTGATGAGAGAGTAGTAGACGTTATTAATGATGTGTGGAACTCTGATTTAAAGTCTGCGTCTGCAACTGAGGATGAGATCACCGAAACAGCTGGTTCAAGTAAAATATTTTTTGAAAAAATCTCTGATGATGATGATGATGGTGATATATTTGATGAAACTAACTTGGCCAAAGCACAATATGGAGAAACATCAAATAGACAAGCCACGGTTTCCAATGACATTCATCCAAACAAGAGATCTCAAGCACCACTGACGTCTTTGGGAAATAATGAACTTAGTGATATTTCTAACATTGTGGAAGATACAACATCAGAATTGTCAGGTGAAGAAACACCAGTTAAAGACATGAACAAGTGTTTTGAAGCATGGTTTACAAAGAGAAAGAAATCCAGCAATGTGAACCACACTAGACCATTCCATCAGAACGAGAAGGCTAAGACCTCTAAAAAATGTCTTGGGTGTAAGCTTGATTTCAATAAAGTCAACAGTCGGAATCTTCTCAGTACTTTACGCACAAGTATTCACACATGTCCAGTCCATCGTGATTATCTCGTCCGTGTACAATCCACTATACACAGTTACAAACGTTCCCTCGAGTTAAAAACAAGATCGCCTAATTTTGGGTTTGTTGCATCTCCAAGAATGAATTCACAATGTGACAAGTCACCAGTCCAGATATTAAAAAAGATCAAGCTCAAACCAAAGATTGCAAATGTAGCTAAAATACCTTTTAGTAGAAGAGACGTAGAAACTCTTCGTGATGGTGTGAGGGAATATGGAGAAAGTTGGACAATGATTTCAGAAACCTGTCCGTTCATTGTAGAAAGATCTCCTAGAACTTTAAAACAAAAGTTTAAAAGCATTAAAAAGGGAAATTACGGTAGGAGAAAAAGACGCTCGTTCTCTCGCCAAGAAATAAATAATCTGAAAAAAGGAGTTTTGAAATTTGGATATTCATGGAAACATATATTTACTAAGTTTATGTTTGAAGAGGGCAGAACACCGCAAGACTTAAAAGATAAATGGCGCAATCTGATAAAGTAA

Transcript

Ppa0G269370

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NA31	Telomere repeats-binding bouquet formation protein 1 OS=Homo sapiens OX=9606 GN=TERB1 PE=1 SV=3
Q8C0V1	Telomere repeats-binding bouquet formation protein 1 OS=Mus musculus OX=10090 GN=Terb1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007645 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00249 all species →	Myb_DNA-binding	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR042359 all species →	Family	Telomere repeats-binding bouquet formation protein 1	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR017930 all species →	Domain	Myb domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14014 all species →	TELOMERE REPEATS-BINDING BOUQUET FORMATION PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007129 all species →	Biological Process	homologous chromosome pairing at meiosis	Interproscan
GO:0070197 all species →	Biological Process	meiotic attachment of telomere to nuclear envelope	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25749	TERB1; telomere repeats-binding bouquet formation protein 1	-	DNA replication proteins	ko03032	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.