Gene detail

Detailed information of Ppa0G271530 in Paragorgia papillata

Genomic Location: Contig00423:865171...894864
NR annotation: CAB3979092.1, liprin-alpha-1 isoform X4 [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G271530

ATGTACTGCACCGACGTGATGGCTACGATCGACGAGAATGGACTGGATATTCACGACGAGCAAGGAGACGAGAGCAACTTTGAACAACTGATGGTGAATATGTTGGACGAACGTGATAAACTGATGGAATCACTTCGCGAAACCCAAGAAACAGTCGCTTTAACCAAATCTAAACTAAGCGAGTCGATTAGCGAGAAGGAAGGCCTAATGCGTCGACTCGAGATCGTCCTGGCTGAGGCTGATGACGAGACTTTAGAGCGTCTTGCTGGTTTGGATGGAATAAACTACGACGGAGAATTTCGTATACGGGAAGGCAAGAGAGCTTCCCATGTCAAAACTCTTGCCGAGGAATTCTGTGCCATGGTGAAGGAACTAAATTATGCAAGAGAACAATTACTGGAAAAAGATGAGGAAATTGTTGAATTGAAATCTGAAAGAAACAACATTAAATTATTACTAGAGCATTTGGAGTGCCTTGTTTCTCGACACGAGCGTTCACTAAGGATGACAGTTGTAAGACGGCAAGCAACCATGTCTGGTGGAGTGTCATCTGAAGTAGAAGTTTTAAAAGCATTGAAATCATTATTTGAACATCATAAAGCTTTAGATGAAAAGGTGAGGGAGAAACTGAAGTCAGCTGTTGATCGAGCCAACAGTTTAGAAAATGAACTGGACGTTCTGAGGGATCAGGTGAAACGACTAAAAGACGAGAACTTGACGTTACGAGTGAAGAGTGGCTCTGAAAATGAAACTGAAGCTTTAACAACTCTTCATATTAATGGTGGATTACCATATTGTAATCATACTTCAGAGAGATGTGGAGGAAAGATGTCAAACGGACCCATTCTTAACGACGAAGATGGTCAGGATCTAGATGCTATTAACGAATTACAATTTAAGTTAGATAAAAAGAATAGAGAACTTGAAAAGACTTTAAAAGAGAACGCCTTTCTCAAAGAACGAATGAGTTCCATGGATAGCAAGACGATACTTCTGACCAGCGAACTTGACAGAGCTCAATCAAAGACAGAAAAATTGAAATCACAAGCAGATGAGGTCGTAGCACAAAAGTCTGATCTCGAAGATAGGGTGTCAATTTTAGAGAAAAAATATCAACAAGTTCAGCGAGATCTACTGTCATCAAAAGACGATAACGAAAGACTGGAAAATGAATTGACAAGTAAAGAATCCAGTGTTTTACAGACTGAAGAAAGGTGTCGAAATCTTCAAGAGAAGCTTGAATTAGCGGAGCAAAAGCTACATCAGTCATTGAGAAAAGCAGAGGCTCTGCCAGTTGTCGAGGAAGAACTAGCTGTGCGGTTAGCTGCCTTGAATCAGGCGGAGGAAAAGAGTTTGTCTGCCAGTGAAAGAATTTCGAATTTACACCAGCAAATCGATGATATTCAATCTGAATTAAATAGGTCGAAACAAAGGGAAAAAATGAACGAGGAACATTCACATCGACTGTCTACAACAGTTGATAAATTACTGGCCGAATCTAATGAAAGATTGCAGCAACATTTGAAAGAACGAATGACGGCTTTAGAAGAAAAGACGGCACTGTCTCAAGAACTAGAATGTAAGAAACTTGAGTTAGATGATATACGAAGAGAAAAGGAATTACTAGAAATCAAAATGGAAAAACTAACAGTTCAGTTGGAAAGAGCCCAGATTAAGATTGGTACTAGTACCTTTTCACGACTCGAAGTGCCTGGTATGATTCCCGTTCGTGAGAAAAAAGGACGAGAAGATATGAGTAGCGATCCGGATCGAGTTCTTACGATAAACGAGAAAGATTGGCATAAACTGCAACAGGCCACTGTTTTAGAAAGTGTTGCTAAAGCTTTTGACGGAACTGGCGTGCTGAAAAACGAACAAGATGACGGCGATATCGAGGACAACGACAGCGGCTGTGTTGATGAATTTAAAGCGAACAAACTAAGTGATGGAGCAGAAGAGTTGGCTGTCATGATCCAGGAACAAATAGAATCAATTAACCGAGAATTAAGTTTATTGAAAGAAGATCCTGAAATGGACGACAACGCCTTACTCGCTGAACTTGAAAGAAATCTCGAAAGTGAATATGGTTCTGATACTCAAAGCCTCGACTCCATGTCTGAAATTCATGGTTTAAGATCTTCAAGCACTAACTCTCCAGCGACACGATCAGCAGAGAGCTCGTTGTCGAATCGAAGTAAACGAAACTCCATCGAAGAATTATTTTCTTCAGATAAGGGGAGCTATATTTCTCCACCTTCGATGTTTCCTTTTCCTCAGTATGATCCCATGGACACGCAACCGTTGCAAATCAATCATGAAAGTCGAACTTCTCCCTCCCCGTCAACATCGTTAGATTCCGATCCTCTTGCAAGAGGTCCTATTGCAGGCAATCTTTCACAAATAGCCTCAGGCTTGCCAAGTCCTGAAACACCACCAGTTCAAAAACGTAACCGCACTTTTGACTTGCTAACCCCTGATGGTAGTAGCATCGCAGATGGTCCAAATGGCAGTCATTCTCCTGGCGGTCCAATTCGCAAGCGAGGATTACGTGGTTCATTTGGTAAAATATTCGGCTCGAAATCACGTTCAAAGTACAGAGATAGTACGGGGAGTACTGGGTCAGAGTCGGACAGTGACACGGCGTCTATTGATTCATATGGTTCAGGGATGGGAAAGAGAGAGCTTGATCGTCGAATTAAACGAGGTTCCATTTTACTTGGAGATGCACTGACTGCGAAAACGCCTTTTGCTTTGTGGAATGCCCACACTGTTGTGGCGTGGTTGGAGTTGTGGGTGGGGATGCCTGCTTGGTATGTTGCTGCTTGCCGTGCCAATGTGAAAAGTGGAGCTATTATGTCGGCACTATCAGATACAGAAATTCAACACGAAATCGGTATAAACAATCCCCTTCACAGACTAAAGCTCAGACTAGCAATTCAAGAGATAGTTGCATTAACAAGTCCATCGCAACCCATGACAAGCAAAGAGCTTTTAGTACGTGGTGAAATGAATCATGAATGGGTTGCAAACTGTTGGTTACCCAGTATTGGGTTGCCACAGTACAAGAGTACATTCCATGAATGTTTAATTGATGCGAGAATGTTGGAACACATTTCCAAGAAAGAATATCAAAAATACCTGAAGGTTGTCGATAGCTTTCACAGACGTAGTATACAATGTGGTATTAAATGTTTAGCAAGTTTAAAATTCGATAGAAGATTGCTCGATAAAAGAAGGCAGGACTGTCAGAATGAAGATAAAGATGTATTCGTCTGGAGTAACAATCGTGTTATAAAATGGCTTGCATATATTGGTCTTACGGAGTACGCGGATAATATTAAATTTAGTGGAATACATGGAGGTTTATTTGTTTTGGACCAGGAGTTCAATCATTCAATGTTAACTATGTGTTTGCAAATTCCTACTTCCAATACGCAGATTTGTCAGTTAGTGGAAAGAGAGTACACGAAGCTGACGAGTTCTTCAAATACAAGTCGTTCAAATGTAGATGTCGAGTTAGGTGATGGAAATAAGTTTAAAAGAACTCAATCTTGGCGGAAAATTTTGAAGAAAAAAGATAAGAAAGATAAGGACAAACTGGATAAATTAAAAGAGAGAGAGGAGGGAAGATTGGATGGAACAAATTCGGGATCCGATTCGTCTATCAGTCAAACGAGTACGACGTCATCGACGAGTATGGGAGGAAGAAGGAATAATGCGAAAGGTGAGAATGAGAATAACTGGTCTAGAAAGGATGGCCTTTATTTCAATGTTATTAAAATATTTCTTTCCAATAGTCTGAAGAAACGTTTTCACACAGAGCGTGGAATTAAACGTCCTCCGATGCCATAG

Transcript

Ppa0G271530

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13136	Liprin-alpha-1 OS=Homo sapiens OX=9606 GN=PPFIA1 PE=1 SV=1
O75334	Liprin-alpha-2 OS=Homo sapiens OX=9606 GN=PPFIA2 PE=1 SV=2
Q8BSS9	Liprin-alpha-2 OS=Mus musculus OX=10090 GN=Ppfia2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003627 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07647 all species →	SAM_2	SAM domain (Sterile alpha motif)	Domain	Interproscan
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR037620 all species →	Domain	Liprin-alpha, SAM domain repeat 1	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR029515 all species →	Family	LAR-interacting protein, Liprin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12587 all species →	LAR INTERACTING PROTEIN LIP -RELATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0048786 all species →	Cellular Component	presynaptic active zone	Interproscan
GO:0050808 all species →	Biological Process	synapse organization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26226	PPFIA; liprin-alpha	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.