Gene detail

Detailed information of Ppa0G271860 in Paragorgia papillata

Genomic Location: Contig00423:1612023...1628017
NR annotation: CAB3990411.1, leucine-rich repeat-containing 74A-like [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G271860

ATGGTCCAATCGCATACAGCTTTTTATTGCTGGCTAATTCAACACTTGCGGCCTTTGACATCACATGGCTCTGCAACAGTTACATCACCATCTGACAAAACAAGGCGGTTGACTGCAACTGAAAGACGGCCTAAAACAGCAACAGAACTCCATCGAAAACAGACGAACATCCAAAAGTTTGTATCAAGCGAGATTGCAAATGAAAGTACTAGCAAGACAAGACATTTACCTGAAAGAGCTCGTTCTGCCGTAGGGGGAAATAGAGATCGCAGTATATCATTTACTAGTGACTCTACTGAGGCACTGCCTTCTCGAGTAAAATATAAAACAAGAACCCACTCTCCCTCTTCAGCAGCTGTGCAAGACGCAAATCGTAACACAAAAAAAATCACGCCTTCAATGAAACCGTCGACCAAATCTAGTTTTTCTTCCGCTAATAATAATCTTGTTCATCGTAAAGTGGCATGGTTTTCAGATGCGGACAGTTTGGATACGCAATCTTTTGAAATAGCTAATAACGAAGGATTATCGAGTGATGGACAGACACAATGTTGCTGCGAGAGAAATATACAGGTGGCCCAAGATAAAGCTGAAGAACCAGTTCAAGATATGTTTCATCCGCCAGATTTAAATGCCGAGGAAAGTGGAAATGAATATGAAACTGAGTTAGAGGATCCACCTGCAGCTACTGTTAAACATTTTGATTCTTCTGGGAAAAGAACATATCTGAAATTGTGCAAACAGGAAGATATTTTGCCTGTATCTGGATTAACAAATCAGTTTACAGAGAAAGAGATGGTGGTCAGACATCGTGGACTGGGCGGGACAGGAACAAAACCGCTTGCCAAATCTTTAATGAAAAACGTCTACGTGGAGAAGCTGGATTTAGCTGACAACTATATTGAAGGCGTTGGGGCATCTTTTGTGGCAGCAATGCTTGTTGACAACTGCTATATTACTCAACTGGATTTATCCCAAAATTTTATAGGAGCTGAGGGAGGCTTTGCCTTGGCTGAAATGTTAACGAAGAACCAAGTATTGAGAAAGGTAACTCTTCGTGCCAATCGTTTTACCGACCGTGTTGCCAAGCACTTTGCAGGTACTCTTCGCGAGAACAGAACATTGTGGCATCTAGATTTGAGTCACAACGAGATTGGGGAACAAGGCGCTGTGTACTTTGGAGCAGGACTGGCGTTAAATTATGGCTTGAAACATCTTGATCTGAGCTGGAATTGTATTCGTGGAAAAGGAGGAGTAGCAATCGCCCAAGCTTTGAAGACAAACGACTCTCTCACTACGCTTAATCTTTCATGGAATGGGATTTCTCTTCTTGGATGCGTAGCGCTTGGCAAGTGCCTGAGAAGAAACGAGAATTTGAAAGAGCTAGACCTTAGAAACAATCGAATTGGATATTTGGGAGCGCAAAGAATTTGCCCTGGTATTTCAAGAAACAACTGTCTCGAAGAACTAAAGCTTGGACTCAACCCAATTGGTGACGATGGGGTAGAAGCTTTGTTAAAAGCAGTTAAAATCAACAAAAGTTTGAAGTTTCTTAGTTTAGAGAATATTACGGTGTCTGCAGCAGCTTATCGTGATATACAGCAATTGGAAGAAAGGCGTCAAATCCAAATCATCACTGGAGGACTGGGTAGCTTCAAAAAACCGAAGGAAATGCCTCAACGAATGGCGATATTGCTAGACTTTATCAAAGTGAACCGCTTGAGACTGGTTGATTGGTTCTTCCAGTTTGACAAAGATCACAGTGGCGATATCAGCAAAGATGAATTCAAGACTGGCTTGAAAGAAACAGGTTTAAAAATGACTCAGAAACAACTGGATACGTTAATAGAATATTTGGATGTTGACAACAACGGCAAGATAGAGTACAGCGAACTTCTTATTGGTCGCGATCATACACTGAGGGAACAGCGTGATTTCAGGATGGCCCGACAGAAACTCCGTGATATGGAGGACATGAGAGCACGCTTGCCAACCATCAAAGGCTTCGAGCCTGAGTAA

Transcript

Ppa0G271860

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005803 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052394 all species →	Family	Leucine-rich repeat-containing protein	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24114 all species →	LEUCINE RICH REPEAT FAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G271860.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.