Gene detail

Detailed information of Ppa0G272930 in Paragorgia papillata

Genomic Location: Contig00424:1044330...1105350
NR annotation: XP_048588705.1, ubiquitin carboxyl-terminal hydrolase 25 isoform X2 [Nematostella vectensis]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G272930

ATGGAAGAGTTGCTTGGTAAAGAAACCTCTCAGTCTCAGGAAGCCACCGGTGAAGAAGTGGAATCTCGCGAGGAAAAGATAGAGAAGGAGATCAAGCAACTGCGCGATGAGGCACCGATACCATTGACGGAAGATCCGTTAGAGTGGTGGATGGAAAATGAGAAACGTTACCCTCTGGTCCGAAACCTTGCCGCCAGAGTATTGGCTGCTCCGCCGACATCTGCGCCAAGCGAGCAGATTTTCAGTAAAGCCAGACTGATGACATCATATAATTATGAATTGTATAAGTTTCTTCAACTACTGAGTGGTTTGATTATGGCTAAGGCAAATCATTGTTGTGAGTCCAGAAAGGATTACACTCTTGAAGTAAATCAAATTCGGGATATAACGGGTGCTAATGACAATGAAGCTTGGGATGCACTTAAGGAAGGATCATTTGATCTTGCTAAAGCTATCCAGATTTTAACCGAGCAGACAAAGAAGAAGACTTTGGAACCAAGTACGCAAAGTACATCTAAGGAAGAAAGTATGGTGGTTGATGTCAGCGAAGAAACAGAATTTGAAAAGGCAATTGCACTAAGTCTCCAATCAGCTCCACCGCAGGAACAAAGTACTTCTGGGAAAGAAAGTATGGTGATTGATCTTACAGACGAAAAAGAGAATTCTGAACAAGATATTGAAAAGGCAATTGCACTAAGTCTTCAACAAACTCAGCCAGAGGCCACAAACATATCAAATGAACAACGAGATATTAGTAGAGCTTTGGAAGCGAGTTTTAATGACAGTAAGCCCGGGGGCAAACGAACAAGAACGGACTTTTGGCAAACTGTTGCTGATGTCAATCCCCATACGCAGAAAAGAAAAGATAATTATCCTGTTGGGTTAAGAAATGTTGGTAATACGTGTTGGTTTAGTGCTGTTGTACAGTCGCTGTTTCATATACCAGCTTTCAGAAAAACTATTTTAGAGTTTGCTTGTAATGAAAAGGACGATGCGGAGGGTGATCGAAAAGTAATGACAGTAAGAGAATTGCAAAAGCTTTTTGCTTTTATGATAGAAAGTCGAAAGAAATACATCGATCCAAGTGATGTAATCCAGGCTTTTCTGCTCAACTTAAATGTTCGAAGTGGCTTTGCAGTCGAGAGTAACAAGGGTCGTCGTAAGGATGTGAGCGAGTTTATGATAAAGTTATTAGATTACTTGGAAGATACATTTAAACCTAACTGTCAAACGACTAAAGATGTTAAGTCGTTAAATCCTGTCGCTGAAATGTTTTACGGACAGTACGTGGTGGAAGGGACGAATGCAGGTCAATCTTTTACGAAAGAGGAAACGTTTGGGGCTTATCCACTGCAAATTGCGAAGCATAAAGATCTTCATGAAAGTGTCGAAGGAGCTATGGTTCACAACAACATTGAATCAGCTGAGTTAGATGAAGAAAATACGAACACACAAGAGCACTGGTTTACTCGTCTTCCAGCTGTTCTTATATTGGAATTATCAAGATTTCGTTTCAACCAGAAAAGTCAACAACCTGAGAAGATACACAACAGATTAGAATTTGAAGAAAATATGTACATGGACAGGTACATGAAAGAAAATCGAGCCAGAGTACGAGAATTACGTAAGAAAATTCGAAAATTAAAGACGGAAAAAATACTATCGGAGAAGGATGAACCACGGATCACAGCTAAGATGTTAGGTGTTGATTTTATGGAGGGAGGAAAACCGGAGAACCCGGCGAAAAACCCTCGAAGCACAGGAGAGATCAACTACAACTCTACTCACATGAGTCCAAGCCCGACAACGGGGTCATTCCCAAGCGGTCACCCATCCAATCATCTGAAAGAGAAATCTACTGCTGATGTAGCTGCTGATGCCATGTACCAAGAAGAAGATTTGAAGAAAATTGTTTACAGATTACATGCTGTGTTAGTTCATAAAGGAGAGGCGAATGGTGGTCATTACTGGGCTTTTATTTACGACGCACAGGCTAACACGTGGAGAAAGTTTAATGATATTACTGTAAGTGATGTGACATGGGAGGAAGTTCGACGTGAATCAGTTGGTGGTTGTCATAATGCCAGTGCATATTGTTTGATATACACCGACCGTAAGAAAGCTACAGAATTGTATAATGACAATAATTGGCACATTGCCGAAGAACTGAAGAAATTAGTTGACGAAGATAACAAAGTATTTGAAGAAGAACTTAAGGAATGGGACAAGAAAGAAAGTACGAAAGTTGAACAAGATGCGAATAGTGCCCGGGAGACAGACAGTACTGATGATATGACAATGGAAACTGAGAATACCACCCAACCAGTTTCCGAGGAAAGGAAAGACAACCGTGCTGGAGACCATTTAAGAATACTAAACGACATTACTAACATGGTCAGCAACGCTATTGATAGATGTGATGTGGGAGTGGAAAATGCATTTAAAGATTGGTGTAAGAAGATAAAAGGACACTTAAAGAAAAGAGCTGCCGAAAATCGTTCAGTTTCCAAATGTCAATCGGATGTTCGCTTGGAACACAAGGCCATTTACATGATCAGATGTGATGCTCCATGCGATGTGACGGACAGGGCAATCATAGAAACGTTTTTGCAAGAGACTAGAGAAAAAGTTGAACAGGAAGAGAACATCCGGTTGAACAGCAAAACGAGTATAAGGTTGGTTTATGATGAGCAAGGTAGTGATCTTACATGGAAAGAGTACTATTCAACATTTCAAAAAGCAAATTTAGCTTTCATTAATGGTTTTGAATATCTGTACAATTACAATCACTATATACTTACCGCTGTGGATGGTAAGGTGCAGACATGGATCCTGAGCTTAATTGTTACTTGGATTCAGGTCAGAGGCCATGTTTTGGTCTCCAGCCTTGACCTGTCCAACAATGTCTTGACCTGTCCAACAATGTCTGCACCTATCACACCGACTGTGTCGGTGGAAATTATTCGCCAACGGCTTTCGACGAATTGCACCGGATTGCACTCGGGAACGCTCACAACTCTATCGTGTCCAACTGTAAAATGGCCGCCGTTATACGTACTTGAGCCCGCGATTATGGCTGATCCCGATCTATAA

Transcript

Ppa0G272930

GGATCATCGAAAACAACAGCACACAGGATGATACCGGAATGAGTTTCTTTCCAGATTAAAAAAGTTGTGGAGCGATGGCTTTGTCGTTGTGGCATTCGCGGCGTTAAAAAGTATTTAAAGCGTATCAAATGTCAAACGTGACTTGTTTTGATCCTTCGTCTCTAAGGAAGTTGTCCTCTCTGTTAGTACTCACGCTCTCATTGGCTGTCAATTCAAGATGGACCAATCAGGATGAATTATTACTTGCATAGCAATAGGCAATAGTGGCAGTGCGTCAAGTTCACGGGTCAAGTCTCAGTCAAACTCGTGCAAACACCGCCGAAGAAAAAATCCAGGTCCAAATTAGCCATGGAAGAGTTGCTTGGTAAAGAAACCTCTCAGTCTCAGGAAGCCACCGGTGAAGAAGTGGAATCTCGCGAGGAAAAGATAGAGAAGGAGATCAAGCAACTGCGCGATGAGGCACCGATACCATTGACGGAAGATCCGTTAGAGTGGTGGATGGAAAATGAGAAACGTTACCCTCTGGTCCGAAACCTTGCCGCCAGAGTATTGGCTGCTCCGCCGACATCTGCGCCAAGCGAGCAGATTTTCAGTAAAGCCAGACTGATGACATCATATAATTATGAATTGTATAAGTTTCTTCAACTACTGAGTGGTTTGATTATGGCTAAGGCAAATCATTGTTGTGAGTCCAGAAAGGATTACACTCTTGAAGTAAATCAAATTCGGGATATAACGGGTGCTAATGACAATGAAGCTTGGGATGCACTTAAGGAAGGATCATTTGATCTTGCTAAAGCTATCCAGATTTTAACCGAGCAGACAAAGAAGAAGACTTTGGAACCAAGTACGCAAAGTACATCTAAGGAAGAAAGTATGGTGGTTGATGTCAGCGAAGAAACAGAATTTGAAAAGGCAATTGCACTAAGTCTCCAATCAGCTCCACCGCAGGAACAAAGTACTTCTGGGAAAGAAAGTATGGTGATTGATCTTACAGACGAAAAAGAGAATTCTGAACAAGATATTGAAAAGGCAATTGCACTAAGTCTTCAACAAACTCAGCCAGAGGCCACAAACATATCAAATGAACAACGAGATATTAGTAGAGCTTTGGAAGCGAGTTTTAATGACAGTAAGCCCGGGGGCAAACGAACAAGAACGGACTTTTGGCAAACTGTTGCTGATGTCAATCCCCATACGCAGAAAAGAAAAGATAATTATCCTGTTGGGTTAAGAAATGTTGGTAATACGTGTTGGTTTAGTGCTGTTGTACAGTCGCTGTTTCATATACCAGCTTTCAGAAAAACTATTTTAGAGTTTGCTTGTAATGAAAAGGACGATGCGGAGGGTGATCGAAAAGTAATGACAGTAAGAGAATTGCAAAAGCTTTTTGCTTTTATGATAGAAAGTCGAAAGAAATACATCGATCCAAGTGATGTAATCCAGGCTTTTCTGCTCAACTTAAATGTTCGAAGTGGCTTTGCAGTCGAGAGTAACAAGGGTCGTCGTAAGGATGTGAGCGAGTTTATGATAAAGTTATTAGATTACTTGGAAGATACATTTAAACCTAACTGTCAAACGACTAAAGATGTTAAGTCGTTAAATCCTGTCGCTGAAATGTTTTACGGACAGTACGTGGTGGAAGGGACGAATGCAGGTCAATCTTTTACGAAAGAGGAAACGTTTGGGGCTTATCCACTGCAAATTGCGAAGCATAAAGATCTTCATGAAAGTGTCGAAGGAGCTATGGTTCACAACAACATTGAATCAGCTGAGTTAGATGAAGAAAATACGAACACACAAGAGCACTGGTTTACTCGTCTTCCAGCTGTTCTTATATTGGAATTATCAAGATTTCGTTTCAACCAGAAAAGTCAACAACCTGAGAAGATACACAACAGATTAGAATTTGAAGAAAATATGTACATGGACAGGTACATGAAAGAAAATCGAGCCAGAGTACGAGAATTACGTAAGAAAATTCGAAAATTAAAGACGGAAAAAATACTATCGGAGAAGGATGAACCACGGATCACAGCTAAGATGTTAGGTGTTGATTTTATGGAGGGAGGAAAACCGGAGAACCCGGCGAAAAACCCTCGAAGCACAGGAGAGATCAACTACAACTCTACTCACATGAGTCCAAGCCCGACAACGGGGTCATTCCCAAGCGGTCACCCATCCAATCATCTGAAAGAGAAATCTACTGCTGATGTAGCTGCTGATGCCATGTACCAAGAAGAAGATTTGAAGAAAATTGTTTACAGATTACATGCTGTGTTAGTTCATAAAGGAGAGGCGAATGGTGGTCATTACTGGGCTTTTATTTACGACGCACAGGCTAACACGTGGAGAAAGTTTAATGATATTACTGTAAGTGATGTGACATGGGAGGAAGTTCGACGTGAATCAGTTGGTGGTTGTCATAATGCCAGTGCATATTGTTTGATATACACCGACCGTAAGAAAGCTACAGAATTGTATAATGACAATAATTGGCACATTGCCGAAGAACTGAAGAAATTAGTTGACGAAGATAACAAAGTATTTGAAGAAGAACTTAAGGAATGGGACAAGAAAGAAAGTACGAAAGTTGAACAAGATGCGAATAGTGCCCGGGAGACAGACAGTACTGATGATATGACAATGGAAACTGAGAATACCACCCAACCAGTTTCCGAGGAAAGGAAAGACAACCGTGCTGGAGACCATTTAAGAATACTAAACGACATTACTAACATGGTCAGCAACGCTATTGATAGATGTGATGTGGGAGTGGAAAATGCATTTAAAGATTGGTGTAAGAAGATAAAAGGACACTTAAAGAAAAGAGCTGCCGAAAATCGTTCAGTTTCCAAATGTCAATCGGATGTTCGCTTGGAACACAAGGCCATTTACATGATCAGATGTGATGCTCCATGCGATGTGACGGACAGGGCAATCATAGAAACGTTTTTGCAAGAGACTAGAGAAAAAGTTGAACAGGAAGAGAACATCCGGTTGAACAGCAAAACGAGTATAAGGTTGGTTTATGATGAGCAAGGTAGTGATCTTACATGGAAAGAGTACTATTCAACATTTCAAAAAGCAAATTTAGCTTTCATTAATGGTTTTGAATATCTGTACAATTACAATCACTATATACTTACCGCTGTGGATGGTAAGGTGCAGACATGGATCCTGAGCTTAATTGTTACTTGGATTCAGGTCAGAGGCCATGTTTTGGTCTCCAGCCTTGACCTGTCCAACAATGTCTTGACCTGTCCAACAATGTCTGCACCTATCACACCGACTGTGTCGGTGGAAATTATTCGCCAACGGCTTTCGACGAATTGCACCGGATTGCACTCGGGAACGCTCACAACTCTATCGTGTCCAACTGTAAAATGGCCGCCGTTATACGTACTTGAGCCCGCGATTATGGCTGATCCCGATCTATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UHP3	Ubiquitin carboxyl-terminal hydrolase 25 OS=Homo sapiens OX=9606 GN=USP25 PE=1 SV=4
Q5I043	Ubiquitin carboxyl-terminal hydrolase 28 OS=Mus musculus OX=10090 GN=Usp28 PE=1 SV=1
P57080	Ubiquitin carboxyl-terminal hydrolase 25 OS=Mus musculus OX=10090 GN=Usp25 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008253 (this species only)
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05699 all species →	Dimer_Tnp_hAT	hAT family C-terminal dimerisation region	Domain	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008906 all species →	Domain	HAT, C-terminal dimerisation domain	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan
IPR044635 all species →	Family	Ubiquitin carboxyl-terminal hydrolase 14-like	Interproscan
IPR003903 all species →	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR012337 all species →	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43982 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061136 all species →	Biological Process	regulation of proteasomal protein catabolic process	Interproscan
GO:0070628 all species →	Molecular Function	proteasome binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G272930.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.