Gene detail

Detailed information of Ppa0G274150 in Paragorgia papillata

Genomic Location: Contig00424:3369551...3417118
NR annotation: CAB3977655.1, Structure-specific endonuclease subunit SLX4 [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G274150

ATGATGGTAGTATCTCCAAGTTCAAAGAGAAAATTCCGTAACAGTGAAAAAACAGAATCAAGCTCTCCATTGTTTAAAAAAAGTGAATATTCACAAACATCTGAAAGGTGCAGGGTATCAACTCTGCCTGCAGATGAAAATATTCCAGACAATATGCATAAAGAAAGCAATGGTCATTCTACAGAAACAAAAACACTGGCAACTACCATTCCTATTAAGCAATCTTTTAATGATTTGGATGGTAAAGATCAAAAGCCTACTCGAAAGAAACGACTCAACTTAAAGAAAATAAAGGCTGGTAGTCAGGTAAAATCTATCAAGGATCCAAATAATAGTGAAGAAGAAACTAAGTCAAATTTAAAATATAAAAGTCAACTGGCACTTGAAAATAGATCTACTGTTATTGGTGATGAGTATGCAAACAAAATGGGTCACAATGAAGACACTATGAAATTGGAAAGCAATGATGGTGAATTTAAATGTCCAGACTCATGTACTATGCAAAGCTGTCCTGTTTGCAATATGTCAAGCTTACATATAGAAAGTGACAATGAATGGAGTGAGCATGTTAATAACTGTCTCGACAGTGTAAAAACTGCTTCAACATCATCAAAAGAAACTTCAGGAGCAATTAATTTTAAAGAGTTAGAATTTTGTCAAATTTGTCAAAGAGATATGAGTAGATATAATTCCATTCAACGGCAACAACATGTTAACAGATGTTGCGATAGTATGGAGGAAACACAAAATCATTTACCAGTAACTTCAGCAGCACAAAAACAACTCTCATGCCTTATCTGTGGAAAGCTGTGTAAAACATTCAAGTCTAGGCAATCCCATATGAAAAAATGTGCCAAAGAAAATAATGTCAGCACAGTTCAACTGGTGAAGTTAAATAGAAATGAAAATACTGAGGATCAAACTGATAATTGTCTCAATAAAGATTCAAGGCCTGACTCAAGCAAGGTCAAAGTAGAAAGTCTTGAGACCAAGGAGAAGAAACAGAAAATCTTTAAGAGTAGCAAAAGAAAACGAGATACAAAGTTTCAAAACAAGGATTTGGATGAACAAACTCAACTTGCTCTGGCACTGTCTGCTTCCTTGCAATCAAATGCAAAAGATAAAGGACCTCTTGTAAAAAGAGCTAGGAAAAAACACAAAGGACAAACAACACTTCCAGCTTTGTTATTAAGAAGTGACGATGAAACGAAGAAAGTAACGGAAGCCAGAGCAGCGGCTGTTCTTTGTCATTGGGCTGACAGTGATGATGAAATACAATGTACTCCTGCTCTTGCACCGAGCACTCTACTCCAGAAGTATGTCAGTGAATCGGATACTTACTCTCTAGATGGCACTGATCAAGTTGAAACCAATTCTGATAATCTGGAGCCCGACAATGGAGACGAGAAAGAGATTGCTGGAAGATACGTGTGCATGTCTAACCAGCTAGAGAGAGAAGATAATGATGTGTTACAAGAGGACGAGTCTTTAGAAAAGGAACAGAAAATTGAGATATTTAACGGAACACCTCTAGTAACGACTGTTGCTGAAAACGATAGCAAGAAATCTTTAACAGTGAATACGCAAACTCGGTTATGGCGAATTGCATCTCTTTGCATCGAAAACTTGTCGGAGTCTGGCTTCTATGTACCAAACCTTCTTCCAAAGACAACACCTCGCAAGAAAAAAGTCGTTCGCAAGTCAGGTTCGGAAGCCATTGAAGGACAAGAAGAAGGCTACGCAGTTGCCAGTGATGATAAGAATACTAAACAAGACTCGCCTTTCAAAGCGACTACCCAAAATAATGAAATAACAGAATCCCAAGAGAAAGATATTGAACTTTTAGCCGGGCTGGTTGGTGAAGAGAGATCTGACGATATGCAGTTGAATATTGATGAAGAAGAGGAGAATGAAGAACTTGAGAAAACGTGGTTCCCCTCGAGTGGCTTCTGTGTTCGTAAAGATAATCATGGTCAACAGAACGAAAAGAATGAACATATAGACACATTGCTCAACGACCTTACGTGTATGGTTGGAAATCCTCTTCTTAGTGATGTAGAAATTATCGCAAAAGACAGCCAAAAATTCTTTGCACATAGTTTCATGTTGGCAACAAGATGCAAAACTTTAGCGACAATGCTCTACCAAGAAAAGTTGGTTAGCAATGAAGAGGATGACAGGAATAACAATTTTATTCCCCTGAAAATGGTCGATATCGATGTGCGAGCTGTTCATGCTGTTATGACGTATATCTACACAGCTTCTTTTGTTCCTGTTCAATCTTGTGTCATGGAGGATGTGAAAAAGCTCATCGTAAGATTAAACTTGAATTGTGCTGTTGATGAATGGGAGGAAATGAATGAAAATGAAGAGGTTCTTTCAGATTGTAACGATGGTTTGCAAGAAGATGATAACGAACACGAGGAACATGAAACTGAAAATAACCCAGAGGAAGAGGACAACGCGTTTGGTGATAGTGTTTTAGACGATGAACTGGACGACATGGAAATTAAGATTTATACACAAGTTACTCCAAAGAAAGGTAGTGATTCCGCTGAGGAAAGGAATGATACGAAATTACATAACGATAAAGGCAGCAAACACGTTGATGAAAGAAATTTTATTGACAAATATGTTGTCGAATTGGATTCGGATTCCGACGAAAGCGTGGCAGCAAAGAGTACAAGTCACGATTTACCAGATGGGGACATTCCACTTGATTCCGACGACTGGTTTATTCCTGATACCCCGCCCGAGTCCCTATCTGATTTAACTTCGCTGGCTAAATCTCATAAATCTCGAACGGAATATGACAATAAGGCACAGAGTATAAAAGATGACACATTATCAGGTGACTTAACTAAACCAAAGAAACCCATTATACCTCCCAAAGACCAAGAAGAAACGCAGCGATATTGTCTTTTAGATTCGTATCCCCCCACCAGTAGCCTAACTTCCAAGCATAATTCTTCTCCAAATGCTAGCTACATCAACAGTAGTCTGAACAAAGAAGAAACTTCTAATACTATCGATAATCTATCACCCATGTCTCCTGAGGAGATAACCGTTTTTCCCGCGTCACCAAACCAGTCATTTCATGCGCAACACCACGATAACTCTACTATGGGCCCACAAGATAGTTTTGTCCCCAAATCTCAGAAATTTGAGTCTAATGATTTTGAGAATAGTGAGTTGGAAACTGTAAGTCCACCAGTTTTGGAGACCACACAAAACACAAAGAAATCTATATGTGAAAGTAGTATGAACGTTGATAGTTGGCTAGACGGGTCGATTTCCTCTTCGATATTGCGGGTTATATCAACGCCCGAACGTCGTGCTTCTCACATTGAAAATGACCTAAATGACGACGACGATGTTTGTTATGATAACCAAGATTTTGATTGCTACGATGACGGTGGTTTCAATTGTGATATTGAAGATTATTTTAATGCTGATACGCCTACTGAATTTGATGCTGGCGTGCAGCAGTGTACAAGTGAAAGAGGAGACGAAGAAGAGAAGATTGAGCAAGTGCAGCCTGTGCAGGAAAACCCCAAACGTTGTAAGACACAGATGAAAGAGCATCTTGAAAAAGGAATTATATGTAAGCGCAGTAGGACTACTAATAACAAGCGGCAGCAGTTGGAGGCTGATGCTTCTCACATTGAAAATGACCTAAATGACGACGACGATGTTTGTTACGATAACCAAGATTTTGACTGCTATGATGACGGTGGTTTCAATTGTGATATTGAAGATTATTTTGATACTGACACTCCCACTGAATTTGATGCTGACGTGCAGCAGTGTGCAAGTGAAAGAGAAGATGAAAACGCAGTTGTTGAGCAAGTGCAGCCTGTGCAGGAAAAACCCAAAAGTTGTAAGACACAAATGAAAGACCATCTTGAAAAAGGAATATGTAAGCGCAGTAGGACTACTAATAACAAGCGGCGGCAGTTGGAGGCTCAAAACTCAAAGACTCCAATGTTAGACTATTCAAATATGGATACACCCGATCTGACGACGAAATTGAAACAATACGGCGTCCGACCACTACCAAAACGCAAGATGGTAATTAAATTGAAAGAAATCTATCATTTTACACATCAAGATACAAGTTCAGAAGATGAGACCGATAACGAACAAGATCAGAGACAAGCTACAGTAGAAATAGAGCAGCGCAATCGTGAAAAGCCAAAGAAATCCACGACTGAAGAAAATAATTCCGTGGAAGGCAGCACCCAAGCTAGTGGGGAATCCAGTACTGAGAGTAGTGGTACTGGTAGTTATTTTGACGAAGAGTTGTCCCAGGAGGTTGACGTTTTGTCTCAAGAGTCGTCCATTAATCTTTCAAAGCAACTAATGTCGTTCCTAACTCAAGATCACGACCTATATCTTAAGGTTCTAAAATATGAGCCCATTTCTTTAGCTACACTGCAAGGGATGTTGAAAGATAATGGCATTAAGTGTCCTATCAACGAATTGAAGAACTTCTTGGATGAACAGTGTATCACATTCTCAGTACCGCGCACTGCCCGAGCCAAAAAAAGACAGCGACGAGCAAAACCAAAATCTCGAAAGAATAATTGA

Transcript

Ppa0G274150

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P1D7	Structure-specific endonuclease subunit SLX4 OS=Mus musculus OX=10090 GN=Slx4 PE=1 SV=1
Q8IY92	Structure-specific endonuclease subunit SLX4 OS=Homo sapiens OX=9606 GN=SLX4 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003697 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09494 all species →	Slx4	Slx4 endonuclease	Domain	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR018574 all species →	Family	Structure-specific endonuclease subunit Slx4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21541 all species →	BTB POZ DOMAIN CONTAINING 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000712 all species →	Biological Process	resolution of meiotic recombination intermediates	Interproscan
GO:0033557 all species →	Cellular Component	Slx1-Slx4 complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10484	BTBD12, SLX4; structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.