Gene detail

Detailed information of Ppa0G280300 in Paragorgia papillata

Genomic Location: Contig00427:2369339...2377028
NR annotation: CAB3982189.1, Hypothetical predicted protein [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PBA2	Protein LSM12 homolog A OS=Danio rerio OX=7955 GN=lsm12a PE=2 SV=1
Q6NSN1	Protein LSM12 homolog B OS=Danio rerio OX=7955 GN=lsm12b PE=2 SV=1
Q9VT67	LSM12 homolog B OS=Drosophila melanogaster OX=7227 GN=Hez PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008737 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09793 all species →	AD	Anticodon-binding domain	Domain	Interproscan
PF21166 all species →	LSM12_LSM	LSM12, LSM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047574 all species →	Domain	AD domain	Interproscan
IPR019181 all species →	Domain	LSM12, anticodon-binding domain	Interproscan
IPR039683 all species →	Family	Protein Lsm12-like	Interproscan
IPR048478 all species →	Domain	LSM12, LSM domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13542 all species →	LSM12 HOMOLOG	Interproscan

Gene Ontology

No Gene Ontology signature was detected for Ppa0G280300. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23643	LSM12; protein LSM12	-	Circadian rhythm - fly	ko04711	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.