Gene detail

Detailed information of Ppa0G281410 in Paragorgia papillata

Genomic Location: Contig00427:4680370...4684845
NR annotation: XP_028410444.1, tax1-binding protein 1 homolog B-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G281410

ATGAACGGCGAAACCCCGACAACGGAATCCCGAGAAGAATCCAAATTCGCTGCCGTTGTGTTTCACAACATACAAGAGGTCTACATTCCCGGAAAAGATATTCGTTGTTGCTATTCCATCAAACCTTCGGTGTCCCCGACAGCAAACGACTGGATAGGACTGTTCAAAGTCGGATGGCAGTCCTGTAAAGATTATTTGTGCTACGAATACTCGCCCGTCATTGAAAAGAATAGCGCTTCGACGTCTTCTTCCCCAAACTCGGTTCTATTTCGTGGCAGCAAATTGCCCCCGGAGGAAGTCGAGTTTTATCAGTTTTGTTACGTTACCAGCAGCGGAGAAATTCGTGGGGCCAGTTACCCGTTTCAGATACAGTTTTCTAAGCCGGGCGAACTCGAGTGCAGCGAGGAAAGCGACGAAAATGGGGATACTTTATTGGTCGTCAGAAACCGAACCACCATGTTGGAAGACTCGCTCGCGAAGGCTTATGACGAAAACGCTTCCCTGAAAGCGTCGAAGGAAAAGGCCGAGGCGGATTGCATCTCGTTTCAAGACATGATCCTGAATTTGGAAAGCCAAAAGAACGAACTATGTACTCGGCTGCTGGCGAAAACCAAGTCCAGCGAGAAAATGGAAAAATCCTGGAAAGAATCGAGCGAAATGTTCAAGAATTCAGAGCAGGCGCTGAAGGAAGCGAGAACGAAGATTTTGGAGTTACGTAAATCGGCCGAGGTCGAAAAACTTCGGTCTGATCGCACCGATGAAGATCAGAAGAAACTCGAAGATGAGAGGATGCAGCTTTTGCAAGATGTTTCCGATGGGCAGAGCCAAGTCGACAGGCTGAATGTCGTGGTGATTCAGAAAAATTCCGAGATTTTTAGCCTGCAAGAAAAGGTGGAGAAGATGGTTCAGGAAAATGTCGCCCTTGTGAAGGAACATGAGGACATGCTTGGTGAGATATCGACATCTCAGGCAGCACTGAAAGAAACAAAGCAAGCAATTCTAGCTCTGGAGAAATCTCTGGCAGAACATCTTGAGCAAATGAACCTCCTGCAAAAAGAAAATTCTAAGCTGAAAATTGAGTTGGTTTCTGTTCAGGCTGATATGGATCAATTGACCTCTTCCCTCAATGACGAAAGGAACCAAGTGAATGAGAACCACCTGAAAGAGATCAACAGCTTAGAGGAACACACCGAGAAGCTCACAAAAGTGATACAAGATAAAGAGAGAGCTCTCGATGTTTGTGAAGAGAAAGTTCTGGAGATGAGTTGTGTGCTTGAGGAAGAGAGAGCTATGCACAAGCAGTTGATTGAAGAGTATGAAGATTCTTTGACAAACATTCAGGAGCAACTGAACCAAGAGAGAGCCTTCAATAACTCATTGAGTACTGCATCCGATCGCCAAGTGGCTGAACTCCAAGAGCAGCTAAATATCCAGTTGGAAAAGAATTCTACTGCTTGCCAACAGATCGAAGTAAAGACACAAGAAATTAAAAGGCTGGAAGAAGAGTTGAAGGGAAATGAAAAGGTGATAGTGAATATGGAACAGTGCATTGATGAGTCAAAAAAGGAGTTAGAGTCAGCTAAAAATCTTGAGGAGGAATACTTACAATCCAAAGCAGCTGAAGAAAAGAAGACAGAACAGAACTCTGCCTTAGATGGACCATATTTTGCTTTGCAAACAGCTCATGCCCAAGTCAAGAAGCAGTATTTACAAGCCAAGAAAGACATGGATAACCTCTGGAGACAGAAAAGTGATCTGAAACGACAACTGACCACTCTTCAATCTGAGCTACCAGATTCTGATTTACGATTCCAGATGGCCAATCTGAAGAAACAAATTGAAGATCTTCGTATACGCTTAAACATGGGAGCGGAAGCATATAAGGCCAAGTTTAAGGAGTGCCGGAAATATCAGAACCAACTCAAGAAAGTTCAAAAAGATTCTTCTGGGAGAACCACTCCACAGAGCCCTCTGTCTGTTACTGAGTTTGAGATTAGGAATCTTAAACAGGCCATTGAAAATGAGAAGACAAATACTGCTGCTATAAAGAAATCTTTGGAGAACTATAAGAAGGATTTACATGATGCGAAACAAGAGCTGGAAAAGGCAAGTATTGTCAAAAAAGAAAATGAAGGTCTACACCAAAAAGTCAGCAAGCTTGAAGAAGAGTCTGTTGTAACAAATGAAGAAAAGCAGCGACGATTGCTTGAAGATAAAGAAGTTCAGTCTCATATTGAATTTCTTCGTCAAGAACTGCAATCACGAACTGAAGCAATGAAGGCTGCAGAGCTAGGATGCAAGAAAGCTTCTGATGAAAAAGAAAGTGTAATTGCTACCTTGACTGAGAAGAATCAAAGTCTTCAGGATGCCCTGGAGAGCAAAACAGATGAGGCAAACCAGAAGATGTTGAGTGAAATAAACATGTTGCAGGATGAGGTTGTGAGACATAAAAAAATTGTTGAAGACCTTGACAGTCACCTTCAAGAGAAGAATGATAGAGAAACATCACTTTTGCAAAGGATAAATCAACTGGAACCAAATGATTCAGCACCTGCCAATGTACCTGACTGGGTGAATGATAGCAATGACCAACGCAATCCTCCTGTGACGTCATCTCCAAAACCCCAAAACGTCTGCCCAGTATGTAATATATATTTTCCACCAAATTGTCCTCAGAAAAATTTCGAAGAGCATGTTGATGGCCATTTTTGTGACTAA

Transcript

Ppa0G281410

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P132	Tax1-binding protein 1 homolog B OS=Danio rerio OX=7955 GN=tax1bp1b PE=2 SV=3
Q66HA4	Tax1-binding protein 1 homolog OS=Rattus norvegicus OX=10116 GN=Tax1bp1 PE=2 SV=1
Q86VP1	Tax1-binding protein 1 OS=Homo sapiens OX=9606 GN=TAX1BP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006848 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17751 all species →	SKICH	SKICH domain	Domain	Interproscan
PF18112 all species →	Zn-C2H2_12	Autophagy receptor zinc finger-C2H2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051002 all species →	Family	Ubiquitin-binding and autophagy-associated domain-containing protein	Interproscan
IPR009017 all species →	Homologous_superfamily	Green fluorescent protein	Interproscan
IPR041611 all species →	Domain	SKICH domain	Interproscan
IPR041641 all species →	Domain	CALCOCO1/2, zinc finger UBZ1-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31915 all species →	SKICH DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for Ppa0G281410. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21347	TAX1BP1; Tax1-binding protein 1	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.