Gene detail

Detailed information of Ppa0G281620 in Paragorgia papillata

Genomic Location: Contig00427:5044800...5049879
NR annotation: CAB4007022.1, RNA 3 -terminal phosphate cyclase [Paramuricea clavata]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q2HJ88	RNA 3'-terminal phosphate cyclase OS=Bos taurus OX=9913 GN=RTCA PE=2 SV=1
O00442	RNA 3'-terminal phosphate cyclase OS=Homo sapiens OX=9606 GN=RTCA PE=1 SV=1
Q4R3J0	RNA 3'-terminal phosphate cyclase OS=Macaca fascicularis OX=9541 GN=RTCA PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001906 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05189 all species →	RTC_insert	RNA 3'-terminal phosphate cyclase (RTC), insert domain	Domain	Interproscan
PF01137 all species →	RTC	RNA 3'-terminal phosphate cyclase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013791 all species →	Domain	RNA 3'-terminal phosphate cyclase, insert domain	Interproscan
IPR023797 all species →	Domain	RNA 3'-terminal phosphate cyclase domain	Interproscan
IPR000228 all species →	Family	RNA 3'-terminal phosphate cyclase	Interproscan
IPR013792 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta	Interproscan
IPR036553 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase, insert domain superfamily	Interproscan
IPR037136 all species →	Homologous_superfamily	RNA 3'-terminal phosphate cyclase domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11096 all species →	RNA 3' TERMINAL PHOSPHATE CYCLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003963 all species →	Molecular Function	RNA-3'-phosphate cyclase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G281620.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.