Gene detail

Detailed information of Ppa0G286550 in Paragorgia papillata

Genomic Location: Contig00431:1934362...1938521
NR annotation: CAB4021745.1, uncharacterized protein K02A2.6-like [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G286550

ATGGCTACAAAGTTAGACCTTATACCAATGGCACAGTTCGATCCACATGCGGATCCAAGCAGTTTAGGCACTCGATGGAAACAATGGCTCAAGCGATTCAACACTTATCTCCGAGCGGGAAACATCACAAACGCAACACAGAAACGAGCTCTACTGCTCTATCAAGCTGGTCCACAAGTAGAGGAAACATTTGAAACCTTATCAAATACTGGAGATGACGACGATTTTAAAACAGCCGTCGAGAAATTGTCAGAATATTTTATGCCTAAAAGGAACCTCGAGTACGAAATCTATGTATTCCGTCAAGCCCGACAAACTACCGAGGAAACACTGGATCAATATCACACACGCCTTCGGAAACTAGCCTCCACCTGTGGGTTCGGCGACGTTGATCGTGAAATCAAAACACAGATAATCCAAAGCTGCACATCTACCCGTCTTCGACGAAAAGCACTTCGCGATTCGTCACTAACCTTAACCACACTCCTGACGGAAGGCCGTTCTATCGAAATAAGTGAAACGCAAGCGAAAGGAATCGAAAAATCTCTTGCGTCCGTCGATCTTTGCACAAAACCTCCGAGTGAAATCGACAACAGTCTGAACGCCATTCGACCGCAAAAACAACAGTCTTCTCAACGAGACACTGTGAGCCGTAAATGCTACTATTGCGGATTTGATTATCCTCACAAGAACAATCGATGCCCAGCCCAAGGCAAAGAGTGTTCAAGTTGCCACAAGATGAACCATTTTGCAAAGGTTTGCAAAAGCAATCAAAACACAAACAAGTTCTTCTCAAGACCGCAACCAACGCTTGACAGCAAGCCGCCATCAATCAAAACATTGTCAGATAACAAGGCGCCGTGTAATGAAAGCCAGTCATCATCAGAAGAAGAGTACTTATACACCGTCAAAAAAGAAAGAACAAATACCTCTACAGACAACCTTAATGCCAAATTAAAAGTCAATGGAGTGAACTTTCAAGCACTTGTAGATACTGGGGCGTCCATAAACGTCGTCGATGAAATAACTTTCCAAAGCTTATGTAAACAGAAAGCTATCAAGCTACATCGTCCAAAAGCTCGCGTATACGCTTATGGCTCACAATCACCCCTTCCAATGGTTGGCATTACAGCTGCTAAGTTTCATGTGACAAAAGGAAACAATGGAAACTTAGTTTGTTCCCAAACGGCAGCAGAGCTGGGCTTAATAAAGCTACAAGTCAACAACATCGCTATAGCGGAAATGGTCAACCAAGACAACGATGCGACCAAAACACAATCGGCCCCAATCAACGAAACCAACACCCATAATCATGATGATACATTTATTCAAGATTTAACCAGTGAGTATCGAGACTTATTCAGTGGAATTGGTTGCCTCACAAACTTTGAACTCAAACTTCACATAGACCCGAATGTAAAGCCTGTTGCACAACCAGAAAGAAGAATACCATTTCACATTCGTAACAAAGTAGACGAAGAGCTTGACCACTTAGCAGAAAACGGCATCATCGAACCCTGTACAGGTCCTACTCCATGGGTTTCACCATTAGTTGTAACACCGAAACCGAAAAACCCAGACGAAGTAAGAATTTGTGTGGACATGCGTCTTCCCAACACAGCAATACTCCGCGAGCGCCATCCTATGCCCACTGTCGATGAACTCATTCACAAACTAAATGGTGCTACAGTGTTTTCCAAATTAGATCTTCGCCATGGCTATCATCAAATACACCTCGCACCGGAGTCCAGGAACATTACTACTTTTCGTACTCATAAAGGGCTACATCGATACGTCCGACTCAACTATGGGACATCCTCAGCAGCTGAAGTATTCCAGTTTGCCATAAGCCAAGCCATTGCTGGTATTGATGGTGTTCTTAACATCAGCGATGACATCTTAATCTTTGGTTCTACACAGTCTGCCCACGACACAGCTCTTAGGAATGTCTTCGCACGATTGCGACAAGTTGGTCTCACCCTCAACGAGTCAAAATGCGCTTACAACAAGCATACCCTCGAATTCTTCGGGATGATTTTTTCTGCAGACGGAGTTGGTCCCGACCCCAAGAAGATAGCCGCCATAGTCAACGCGTCCCATCCATCTAATGTCAGTGGATACAGGGTTCGCAGTGAACTTTCCACCAGCAACGACAACGACCTGGTCCTAAAGTCAACACGAATTATAATACCAACCACACTACGACAGCAAGCTATAGACCTGGCCCATGAAGGTCATCAGGCATTGACCAAAACTAAACAATTAATACGAGAGAAAATTTGGTTCCCATTCATCGACACGGCAGTAAAGAAGATCATAGACTCCTGTATCCCATGTCAAAGTACTACACCAGCTAACCCTCCTGTACCTCTAAAGATGTCAAGACTGCCACCAGCACCATGGCATACGGTGCATATGGATTTCCTTGGTCCCCTTCCAAGTAGAGAGCTACTACTGGTTGTCATAGATGCTTATTCCAGATACCCAGAAGTTGAAATTATACATTCAACAGCGGCACCCACCGTCATACCAAAACTCAACAGAATATTCTCCACACATGGAATGCCTCACAAAGTAATCACTGATAATGGACCACCATTTAACGGACACGAAATAAGAAGATCCATGGAGATCCATGGCATACAGTTCAACACAATTACCCCATTATGGCCACAAGGGAACTCGGAAGCGGAGTCATTCATGAAACCATTGCTAAAATCCATCCTAACAGCACGCACAGAAGGAAAACTATGGGAAAAGGAGCTATATACCTTTCTTCTGAACTATCGAGCAGCACCCCATAGTACCACCAAGGTTGCCCCAGCAGAACTGCTGTTCAATAGAACAATCCGTACCAAACTACCACAACAACCCACAACACCCAAACCAATCAACAAGCATGCAGTGGCAAGGCAGAACGACCAGGAAGCCAAGACGAAAATGAAAACGTATGCTGACCAGGCCAGACATGTAAAGAAAATCCAGATCAATGTTGGTGATTTAGTCCTCTGTAAGCAACAAAAGAAGAATAAATTTTCAACTAAATTTAACCCCAGTCCATACAAGGTAATTAAAGTCAAAGGCTCTACCATCACAGCTCAAAGACATTCGCATCAAATAACCAGGAACATATCCTACTTCAAACCCATAAACCACGACAATGAACAAGACCAATCTTGTGATGATCTGGATGAAGTCTGGGATGACGAGGAAGATGGGAGGATGAGAAATGGACAGGATCAACAAAATGAAGTAGAAGCAAGAAGATACCCGATAAGAAACAGGCAGCAGACAAACTTTTATCATGATCCAAACTCTTCAGTTGTTTCTCATTAA

Transcript

Ppa0G286550

Protein

Uniprot

Uniprot term	Description
Q09575	Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans OX=6239 GN=K02A2.6 PE=4 SV=1
P0CT41	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1
P0CT34	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00665	rve	Integrase core domain	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan
PF00078	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR000477	Domain	Reverse transcriptase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14570	REX1, REXO1, REXO5, RNH70; RNA exonuclease	EC:3.1.-.-	Ribosome biogenesis	ko03009	deepkoala