Gene detail

Detailed information of Ppa0G287870 in Paragorgia papillata

Genomic Location: Contig00433:119516...123657
NR annotation: XP_028395517.1, THO complex subunit 4-like [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O08583	THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3
Q9JJW6	Aly/REF export factor 2 OS=Mus musculus OX=10090 GN=Alyref2 PE=1 SV=1
Q3T0I4	THO complex subunit 4 OS=Bos taurus OX=9913 GN=ALYREF PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006966 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13865 all species →	FoP_duplication	C-terminal duplication domain of Friend of PRMT1	Family	Interproscan
PF00076 all species →	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR025715 all species →	Domain	Chromatin target of PRMT1 protein, C-terminal	Interproscan
IPR051229 all species →	Family	ALYREF mRNA export adapter	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19965 all species →	RNA AND EXPORT FACTOR BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006406 all species →	Biological Process	mRNA export from nucleus	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12881	THOC4, ALY; THO complex subunit 4	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.