Gene detail

Detailed information of Ppa0G288580 in Paragorgia papillata

Genomic Location: Contig00433:1174925...1176200
NR annotation: CAB3998636.1, mediator of RNA polymerase II transcription subunit 11-like [Paramuricea clavata]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VVS4	Mediator of RNA polymerase II transcription subunit 11 OS=Drosophila melanogaster OX=7227 GN=MED11 PE=1 SV=1
Q6P255	Mediator of RNA polymerase II transcription subunit 11 OS=Xenopus tropicalis OX=8364 GN=med11 PE=3 SV=1
Q68EW7	Mediator of RNA polymerase II transcription subunit 11 OS=Xenopus laevis OX=8355 GN=med11 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008767 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10280 all species →	Med11	Mediator complex protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019404 all species →	Family	Mediator complex, subunit Med11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22890 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016592 all species →	Cellular Component	mediator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15131	MED11; mediator of RNA polymerase II transcription subunit 11	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.