Gene detail

Detailed information of Ppa0G288800 in Paragorgia papillata

Genomic Location: Contig00434:231245...258589
NR annotation: XP_028395431.1, tetratricopeptide repeat protein 30A-like isoform X1 [Dendronephthya gigantea]

Gene Structure

More details in Jbrowse

Sequence

CDS

Ppa0G288800

ATGGAGATATCTACAATAAAGGATGGGGAATATACATCTTCCCTTTACAACCTGATAAAGGGTCAGAAATATCAAGAGGCCATTAACCATCTTGCTCTTGAGTTGGAAAACCATCCAAAGTCTCACGCTGCCTTGTCTTTACTTGGATACTGCTATTTTCAACTACAAAATTTTGAAAATGCTGCTGAATGTTACGAGCAGCTCATACAGATTAATCCTGAAGTGGATGAATATAAATTAGCTTATGCACAGTCTTTATATAAAGCATTTAAGTATCCAGAGGCCACAAAAGCAACATTTCAGATTGAAAATCCTGCATGCCAATCACAGGTATTGAAACTTCAAGCTGCAATTAAATATGGTGAAGAGGACCTACAAGGTGCAAAGAGTTTGGTAGAGCAATGTGCAGGAGATGATCCAGACGTTGAAATCAATCTAGGCTGTCTACTGTACAAGGAAGGACGTTATTCTGAAGCTTGCCAGAAATTTTCCTCCGCAATGAATATTCTGGGTTATCAACCAGATTTATCCTACAACATTGCGCTATGTTATTACAGCATGAAGCAATATGCTCCAGCGCTTAAACATATTGCTGATATCATTGAGAAAGGAATTCGGGAACACCCAGAGCTTAGTGTCGGCATGACAACAGAAGGAATAGAAGTCCGTAGCGTTGGAAATACAAAGGTTCTTCACGAAACAGCTTTGGTCGAGGCGTTCAATTTAAAAGCCGCTATTGAATATCAGCTCAAGAACTATGAAGCAGCTCAAGAAGCTCTAACTGACATGCCTCCGAGATCAGAAACGGAACTCGACGCTGTAACTTTGCACAATCAAGCTTTGATGAATATGGAAAGTAATCCAACCACGGGATTCGAAAAGCTTCAATTCTTGTTACAGCAGAATCCATTTCCTCCTGAGACATTTGGTAATCTGTTGCTGCTCTATGTGAAATATCAGTACTATGATCTCGCTGCGGATGTTCTTGCAGAAAACGCTCATTTAACATACAAGTTTCTCACATCGTATTTGTATGAATTTTTGGACGCCATGATCACTCGACAGACTTCACCGGAAGAGGCGTTTCGCAGCTTCGATGAAATGGCTACGAAGCAGACAGAAATGTTACGAAAATTAACTAAACAGGTTCAAGAATCTCGCCAGAACCACGATGACGATGCCGTGAAAAGAGCCGTCAACGAATACGACGAAGCATTGGAAAGGTATATCCCAATTTTAATGTCGCAAGCGAAGATCTACTGGGATTTGGAAAATTACCCACAAGTAGAAAAGATTTTCCGTAAGTCCGTGGAGTTTTGTAATGAACATGAGGTGTGGAAGCTGAACGTTGCCCATGTGTTGTTTATGCAGGAAAATAAATACAAAGAAGCTATTGGTTTCTACGAGCCAATTGTGAAGAAACATTACGATAATATACTCAGTGTAAGTGCGATTGTTCTGGCTAACCTCTGTGTTTCCTACATTATGACAAGCTGTAATGAAGAGGCAGAAGAACTGATGCGAAAAATTGAGAAAGAAGAGGAACAAGTTGCTTATGATGATCCAGACAAGAAGATATATCATCTCTGCATTGTTAACCTTGTTATTGGAACACTCTACTGTGCCAAAGGCAACTACGAGTTCGGTATGTCGAGGATTATCAAAAGTGTTGAACCGTACAATAAAAAGCTTGGCACAGACACGTGGTACTACGCGAAAAGATGCTTCATAAGTTTATTGGAAAACATGGCCAAACATATGATTATGCTCAGAGACAGTATTACACTGGAAATAATACAGTTCTTGGAACACTGCGAAGTTTACGGTCGTAACATACCTGCACTGGTGGAGCAACCACTCGAAGAAGAAAAACTTCATCCAGGGAGAAACACTGTCACAAGTTATAACAATATATTTACGTGGTTGAATTATGAAAAGAAAGCACTTGAAACGCAAACTCAGTTTCACAAGGATATAAAACTCTTAGCGGGAACACCTTTTTTGTTTCATCTTCAAATCCGAAAACGTTGTCCCACTTTAAAGTCAAAGTTAACTTTAACTTTAACTTAA

Transcript

Ppa0G288800

Protein

Uniprot

Uniprot term	Description
Q6INU8	Intraflagellar transport protein 70A OS=Xenopus laevis OX=8355 GN=ift70a PE=2 SV=1
A4IHR1	Intraflagellar transport protein 70A OS=Xenopus tropicalis OX=8364 GN=ift70a PE=2 SV=1
A7YE96	Intraflagellar transport protein 70A OS=Danio rerio OX=7955 GN=ift70a PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00515	TPR_1	Tetratricopeptide repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039941	Family	Tetratricopeptide repeat protein 30	Interproscan
IPR019734	Repeat	Tetratricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20931	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005879	Cellular Component	axonemal microtubule	Interproscan
GO:0030992	Cellular Component	intraciliary transport particle B	Interproscan
GO:0042073	Biological Process	intraciliary transport	Interproscan
GO:0120170	Molecular Function	intraciliary transport particle B binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19683	TTC30, DYF1; tetratricopeptide repeat protein 30	-	Cilium and associated proteins	ko03037	deepkoala