Gene detail

Detailed information of Ppa0G288930 in Paragorgia papillata

Genomic Location: Contig00434:397786...414090
NR annotation: XP_028409437.1, DNA-directed RNA polymerase III subunit RPC5-like isoform X1 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CZT4	DNA-directed RNA polymerase III subunit RPC5 OS=Mus musculus OX=10090 GN=Polr3e PE=1 SV=2
Q9NVU0	DNA-directed RNA polymerase III subunit RPC5 OS=Homo sapiens OX=9606 GN=POLR3E PE=1 SV=1
O74883	DNA-directed RNA polymerase III subunit rpc5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpc37 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003468 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04801 all species →	RPC5	RPC5 protein	Family	Interproscan
PF19725 all species →	RPC5_C	DNA-directed RNA polymerase III subunit RPC5 C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006886 all species →	Family	DNA-directed RNA polymerase III subunit Rpc5	Interproscan
IPR045576 all species →	Domain	DNA-directed RNA polymerase III subunit RPC5, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12069 all species →	DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE RNA POLYMERASE III SUBUNIT 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0042797 all species →	Biological Process	tRNA transcription by RNA polymerase III	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14721	RPC5, POLR3E; DNA-directed RNA polymerase III subunit RPC5	-	Transcription machinery	ko03021	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.