Gene detail

Detailed information of Ppa0G289100 in Paragorgia papillata

Genomic Location: Contig00434:597721...620093
NR annotation: XP_046854607.1, LOW QUALITY PROTEIN: tuberin-like [Xenia sp. Carnegie-2017]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G289100

ATGGCTCGTCCGCCAGATAAATTTCGTTCCCGTTTAAAGCAATTATTGGGGATAAAAAGAAGTCCCAACGACTCTCGTTCTCCACAACTCCCGCCTTCAAGTGTAGAGGAGCCAGTGTTTTGCGACGAATTACTAAAGGAAATTGGTAAAGGAAATAGCCAAGCGTCGCGTGCTCGTATTCTCAAAGAACTTTGCGAGGTCGTGGCAGCGAAACAGTTAGAAGAGCATGCAGTTGAAGCATTGTGGTTAGCTGTGGAAGATCTACTGTATTCAGATGTTTCCACTGAAGTTCGACACATTACACTTCAGTTTTTGACTTCCCTAGTGTCAGGACAGTATGGCACACTTAAATTGCTTCGTGCTCATTTTTTTCGGGTCATTCAAAATCACAACATTCCTGAAGATTTAACCCACAGACTACATTTTTTGAAAGCTTTGACAGCTGAAGGGAAAGAGATATTGTACTTTGAAGAACAAATTGGTCCTTTTTTGCTTTCATGGATGCCAGATGTAATTTCGGGTGAAAAGTCAGACATTTTTTTGCCATTATTGAGAAATTTTATCCGTTACAATGCTAGTTACCTTGATGAAGAAGTTGTTTCTGGCTTAGTGAAGCAAACATGTCAGATGTCAAATACTACTGACAAAGAGACAGATGTAGAGCATGCTCTAGCTGTGCTCGATGCAGTCATACGCTACAGTTCGCTTCCTTCGACCGCGCTTTACTCATTTGTGGTTGCCGTCTGCAACACTGTAAATGTGGAAAAGTTTTGTGAACCAAGCTGGAGGCTTATGAGACATTTATTGGGAACACACCTGGGCCACAACGGAGTGCTGACTATGTGTTACATCCTTGAAGATAGTAACAACTGGAAAAAGTTTTCGCTATTAAGAGGAGCCATCTTCTTCGTTGGAATGTGTCTGTGGGGCTCAAAACGTGTGACGACACTAAAACATAAACCAATTGCTGTGTTGCCGTCGTTTTACAAGGTTTTGTCTTGTGGTAATGAAAACGTTATTTGTGAAGTGACGTTATCAATGCAGAGGTTAGTGAAAAAGTATGGCGCTTATCAGCATGTTGTTGCCTGGGAGTCCATATTGGATATCACAGTAGCTTTACAAGAATACGTTGAGAGGCATCCTTCGTGTACTGCAGTATCGGACAATTTTCACATTTTGGTATCCCTTATCGAAGAACTACACGAGAAACATCAGTTCAATGGTTCTTCGGACAAGTTATTTGGCATCGTTGAACGATGCACCAGCACGAGACCAGAATCGTCTGTAATTCTCCTGGTCTCTCATCGTGCGCAATCGCTTCATCCCTACTGCGATAACTGGTTTGGAAATATCAAAGACTTGATGGAGAAATACTTCAAATGCGAAGAGAGAACGCTAGTAAGGATTAAAGTCTTGGACGTACTTTCAAATATATTGGGAATCTTCTCTCATTTATTCGAGGAAGAGATTCTGGAACATTCTGTTCTGTCATATTTGGATGGTATAGCCAAGGATCAAGATCTCGCTGTGCGGACTAGGGCAGTTCAGTTGCTGGTCGATGTTATCGAAGCATCCGATTCTCTGATAGCATTGGACGTTATGAATATCATTGAGAAAGTAGCCCAATGTCCCGTGGACCCACTAAAACGTTACGTGAAGCCGTGTCACCATGGCCAATGCAATGACCAGCTCCAAGATGAGAAAGTCCTGGAAGACATCAAAGAGGCTGTGTTGGGACTTGTTCGATTATTCAAGGTTAAGTTATTTAGGCAACCACAATCTCATGCAGAGCGCATATTTGGCATCATGGTGTCGCACATAAAAGCTCATTATGTTAATGGTTACAGGACTTACATTGCGTCGCAAATAAGATTGGCGATTCTTGAATGTTTGCTGAGTTTGCGAGCCGATAGTTGTCAACGTTTAGGCATTGTTCAGAATGGTGACAGTGATATTAAGTTCAGTTCTTACTTTGGTTGCGCTGATAAGAAAAGTATATCTGATGAGAAGACACAACAATCGGGCCTTGCATTTATTCCGTATAGCGAAGCTATGAATGTTATTTTAATGTGCTTGCAGCAGGAATGGGAATGGGAGGTTCTGGATATTGTGCTTCGCATCTTTCCAGAAACCCTTCAAGACAAGAATTTGATTTTATCAGGAAAACAATACTTAAACTCAATCTGCAGTGTTTTATGTAAAATGGTTTCAAACTATGATTTTCTTCCTGGATTATGCCGCGTTCCTCACGACATGCGTCGACTTAATCTTTATGGAAGGATTTTTCCGGTGTTAACTGAACTTTCTACATACCATCCTTTTATTGACCAAGAACAACAGTTCTGTATTGTTCGAACGATGGAAATTGGTTTAGTGTCCAGTTCTGCAGCCCTTTGTGTATCGTGTTTAACCATCTGTATGTTGGAGATACCTTATGTAATGACATGCCTTCTTCCTACATTTCTACAATGCTTTGTCAAACTCTCACCAACACCTCAAGTAGCCTTGCCTCTGTTAGAATTTCTTTCAGCGTTGTCTCATCTGCGTGATTTGTACAGAAACTTTACTACTGACCAGTTCAAGTGCGTCTTCGGTATTTGCTTACCCTACACCAACTCATCAAGGTACTCTCAGTATACTGTCACACTGGCTCACCACGTGGTTAGCTCTTGGTATGTTCACTGTCCATTGTTGCTACGAAAGCAGTTTGCCTCGTACATTATAAAGACTTTAAAAGAAACCGATATGTCTTCCATGACACCTCCTCCTTACCTCAAACTTCCCAGTTCTCCCAAGAAGCTCCAGTCCTCTCCTGCTTTCTCGCAGAATGTTGCTGAAAATGAAGATGCTTCGATGTCGTTAACTGCAGAGATGGTCGAGATTACAGTGGACATGATGGCCAAGTACACTTTCTCGTCGTCACTAACGCAGCCTAAAAGAACTGCTGTCGTGGAACAGTTGCTAGGCAACGGAACGTCCCGCAGCTGGCTGCTTGACAACGTACTCGTTACCGTCACCGTTAGCAACCGTCCCCCTTCCAATCTAGCCTGCGCGTATTGTTCGTCGACATTTGCTCAAACCTCGCCGCGTAGGGAGCCTGGATCCGAAGTGGAAAGTGATATGGGAGATTACTCTAAGACAACAGGACTGAAAGTACCGGATGAAAACATTTCACATGAATATGGAAGTGTTCGCAGACGTCACGGTGGCTTTGACGGAGAGGCGTTGAGTCATCCAGATGATACTGGGAACAAAGCTCCAAGTACAAGCGGCACGTGCCAACGCGCTAGGAGCAGAGGGGATGATGGGACTACGTTACCTTCCAGGTCAAAAACAATGACTGAGAGTCGCAATAGCTCCGATGAAAAGGAGTCAGGTGTATCGGAGGAGCCTCGTACGGCCGCGAACCAGTGCACTTGTGTGTGTCAGGGCTGGGCAGAGTTCTTAATAAGAAGAGCAACTGGAAATACGTCGTGGATTATGAGGTTGCAAAATCGACCTAAACTTGCCGGAAGCTTCTCTTCGACGCAGCGTCTAGGGGATCAGATGTGCCCACAAATCTACGAGAGCGTGATCCCGAAAGCGTTTTTCGATGAGTTGTCAACAGACCTTGAAGAAGAGCTAGCCAAACAGAAATTTACTTCTTCAATGGGTCTACTGAGCAAGAGTGCAGACAGTGATACATTGGTGGTGGATATCGTACCAAACGACAAGGAAGAAGACGTTGAACAGGAATGCAACGACAGAAGCAGTGCGGAAGACGATGTTAAAGACGAACAGTTAGACAGTGGCTTAGAAGGGACCGAAGATTCCAAGGTTTCGAATGATGATGGTACATTAAGTGTTAGCGAGGAGATCGACGTGGACAAAAGCACAACAGGTTTGTTTCCTTTACGAAAATTTCACTAG

Transcript

Ppa0G289100

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49815	Tuberin OS=Homo sapiens OX=9606 GN=TSC2 PE=1 SV=2
Q61037	Tuberin OS=Mus musculus OX=10090 GN=Tsc2 PE=1 SV=1
P49816	Tuberin OS=Rattus norvegicus OX=10116 GN=Tsc2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002253 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03542 all species →	Tuberin	Tuberin	Family	Interproscan
PF11864 all species →	DUF3384	Domain of unknown function (DUF3384)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003913 all species →	Family	Tuberin	Interproscan
IPR018515 all species →	Domain	Tuberin-type domain	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR024584 all species →	Domain	Tuberin, N-terminal	Interproscan
IPR027107 all species →	Family	Tuberin/Ral GTPase-activating protein subunit alpha	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10063 all species →	TUBERIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0032007 all species →	Biological Process	negative regulation of TOR signaling	Interproscan
GO:0033596 all species →	Cellular Component	TSC1-TSC2 complex	Interproscan
GO:0043547 all species →	Biological Process	positive regulation of GTPase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G289100.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.