Gene detail

Detailed information of Ppa0G290120 in Paragorgia papillata

Genomic Location: Contig00434:1918011...1927406
NR annotation: XP_028395275.1, chromosome transmission fidelity protein 18 homolog isoform X2 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G290120

ATGGAGGATTGGGATATTCCTGATCAAGATGACTTTGAAAGTCGATTTGCGGACGAACTTGAAATGGTCAACGAAATGGATGAACATGTCGATCGACCTAAAACTGGATTTCGTAAAAGTTTGGTATTTCCTACACCCGACAAGCCACCTGTGATAGAGCAGTCTAATAAAAATGGTGTGAGTCAGGCGATAAAGCGTCAGATTGATGAAATGTATGCACTGCTTTCTGATGGTGATGATGATGAAGTGCTTGACAATAATCATGATGACCATGGTGCTTCCCAAGACTCCCAAGCCAAGCGAGCTCGTATATGCACCAGTCCTGATCAAGAAAATGCAAGAACGAGCCAACCTGAAACTAACCGGTCATCTCCATGGAGGAGTAATGAAAATACAACCAGTCACGAGCCTCATCGGACACCCTCCACAAGATCAAAAGTATTTACTCGACCTCCTCTTGGCAAGGATTGTATTGCACTGAGTGGTTGTGACAGAGGAAGAAGAGTTTATCTTTATTTAAATAAGGAGGATTCAATGGAACCAAATAAGGTTAATAAAAGACAACTGCTTGGTAATAGAAGACCAACTCATCTTCTTGGAACACCATTCTCAGTTCTCAAAGAGGCAATATATGAACAAAAAAGAATTAAACTTCTGGAAGAGTCCAAGAGAATTACTGAGTCTCTAAATGCTGTGTTACATGATGAGTTAATGAATGATGATGGTGGACATGTTGAAGAGCCAAAGGAGAGAGGTCTATGGGTTGATAAATACTCTCCAAAGACATATATTGAACTACTGAGCGATGATGGCATCAACAGAAACCTTCTTTCCTGGTTGAAACTTTGGGATCCTGTTGTGTTTGGTAAGGACAAACCAAAAAGAAAGAAAAGTAATGAAAAACAGACCCAGTTGAAAGACAAAAAATGGAAAAATTATAACGATGAAGAGGATACAGAATGGATGGAATTAGATGCTACAGGAAGACCTGTAAACAAGGTTGCTTTATTGTGTGGTCCACCTGGTCTTGGAAAGACAACGCTAGCACACATAGTTGCCGAACATGCTGGGTACAGTGTTGTTGAAATGAATGCCAGTGATGATAGGTCAGTAGATGTGTTCCGAAATAGGACTGAGTCTGCTACTCAGATGCAGTCAGTCCTGGATTCTGGGAAGAAGCCAAACTGTTTAATCATTGATGAAATTGATGGAGCTCCAACGCCTGCAATAAATGTCTTACTTTCCCTAATAAAGAAAAAAGATTCAAATGCCAGCAATCAGGCAAAGAAGAAAAAGCGTAAGAAAGCTGAAATGCTATCACGACCAATCATTTGCATCTGCAATGATCCGTATGTTCCAGCACTGAGACTGCTGCGTCAGCAAGCATTTGTGCTCACTTTTCCACCAACAATTTCTGGAAGACTAGCTCAAAGGTTAATGGAGGTTTCCAGGAAAGAAGTGCTCCAAACAGACATGACTACCCTGCTAGCGTTATGTGAGAAGGCTGAAAATGATATTAGATCCTGCCTGAACACATTACAGTTCCTTAGACAAAAGAAACAAAACCTGACCTTAGACTTTATTCAGTCTGCTACCATTGGGCAAAAAGACACACAGAAAAGCCTTTTCTCTATTTGGCGAGCTATTTTTCAGCTGCCTCGACAAAAAAAGAAACGGTTTGCTTTACTGTCCAGAAATCTAGCACAAGACACCAATGCGAGTCTAAGCCTTGGTGATCCGACCAGACAGTCAGATATGACCAGTTCTGCTGCAAGGTTTTACAACATGCTGCATTTAGCATCATCAAGTGGACAATACAATAAACTTGAAAATGGTATTTTTGAAAATTATTTGAACATGAAATTCAAAGATGCTCATTTAAACCTGGTAGTGTCAGCTACACAGTGGTTGGAGTTTACTGACCTGGTTTCACAAAGCCTTCTACAGCAGCAGAATTTTGTTCTAATGAGATATCAACCATTTTTATCCGTTGCATTTCACATGTTTTTCGCTGGTCCTTCACAACCAAAAATCAGTTATCCAAGCACAAAATACGAGAACACACTAAAAGAAACGAAGACATTAAATATCATGTCTTCCATGTTGAATGATGTATCTCCTCAGCTGCGTGGGAATTTGGACAATCGAACTATCACTGTAGAACTTCTGCCACTTCTCCTGCATATTATTACACCCTCACTTCGACCGGTGAACACCCAACTGTTCAGTCCAAGTGAGAAACAACAGTTATTAGATTTAATTAATACAATGATCTCGTATAACTTGACGTATCATCAGGAGAGGACCGTTGAAGGAAACTACACCTATGTGTTGGATCCTAACATTGAGGATGTAGTCAAGTTCCCAGGCTTGCCTCAGCATAAACAACTAACTTATGCCACTAAACAGTTAATTGCAAGAGAGATTGGCCTTGAGAAAATGCGCAGAATGGAAAGAATACTCAGAGGCAGAAATACTACGAAAGAAGAATCAAAGAAGAAACAACCATTGGCAAATAAGGAACGATCATCTGAGACAAACCAATCAAGTCCTGTTGTCTTACACCTCAAACCAAAAGCATTGAAACCAAGCACTCACAAGCAAGAGAAGGACTTTTTTGGGAGACCTATTGTTCCAAAAAGTAATTCTGGTAATCTGTCACAAGAGAGTAATTCGAAAAATAAATCAAAATCACCATTTTGGTATAAATTTCAAGAAGGCTTTTCAAATGCTGTCCGAAGAACTATCAAAATACAGGACCTTTTGTGA

Transcript

Ppa0G290120

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NU40	Chromosome transmission fidelity protein 18 homolog OS=Xenopus laevis OX=8355 GN=chtf18 PE=2 SV=1
Q8WVB6	Chromosome transmission fidelity protein 18 homolog OS=Homo sapiens OX=9606 GN=CHTF18 PE=1 SV=1
Q8BIW9	Chromosome transmission fidelity protein 18 homolog OS=Mus musculus OX=10090 GN=Chtf18 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003252 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF08519 all species →	RFC1	Replication factor RFC1 C terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR047854 all species →	Domain	Replication factor C, lid domain	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR053016 all species →	Family	CTF18-RFC complex component	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR013725 all species →	Domain	DNA replication factor RFC1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46765 all species →	P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0003689 all species →	Molecular Function	DNA clamp loader activity	Interproscan
GO:0005663 all species →	Cellular Component	DNA replication factor C complex	Interproscan
GO:0006260 all species →	Biological Process	DNA replication	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11269	CTF18, CHL12; chromosome transmission fidelity protein 18	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.