Gene detail

Detailed information of Ppa0G291790 in Paragorgia papillata

Genomic Location: Contig00435:859299...907311
NR annotation: XP_028390877.1, E3 ubiquitin-protein ligase ubr3-like [Dendronephthya gigantea]
Species abbreviation PPAPI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G291790

ATGGCGGATTTGTTAGCTCGAGGAAGACAAACTGCATCCGCGTCATTGAGAGCGCAGTGTGGAACAGAAATTGGAAAAACACAATTGAATTCACTACTAAATATACTTCTTAATCCTGAGAAAAGTTTTAGCGAGGACACGAAAGAGTGGTGCAAGTGGTTAATAGCTGGGGGCGAAAGTCCAGAAGTGTTTTTAGATAAATTACGTGTTTATGATAGTTCACAAACATGTGGTCTAGTTTGGCACAAGAACTTTGTAGCTTATAGATGTCGAGATTGTGGTACATCACCGTGTATGTCTATTTGTGCTGATTGTTTTCATGGAGGAGATCATGAAGGACATGACTACAACATGTTTCGTAGTCAAGCTGGAGGTGCTTGTGATTGTGGTGATGAAAATGTAATGAAAAAAGAAGGATTCTGTTCTTCTCATGGCAAAGTAAGGTCATCAGCAATGCCTCCTAATGATGTCTTACACATGGCGAAAGCTGTCATTCCTCATTTATTTAACCGACTTTATAAAGAAGTTGGACTATCATTAAATTCAGATGACACCATTTTATCTGTGAATGATAACATTGAGGAAGTAGTCATTTTTTTACAAGAACTTTGTAAAGGAGAGGTCTTACGGAGCGTTACGTGTGATGTCATTGTCCAAGAATGTTTGGATATAAGACATTGTAGTAGTACAGATCTCGTGTGCTTGGATTATGAAACATCGTCGTGTTCTTCACACGATTTTTTAACAGTTGAAAGTTGTCAGGATCTTGTCAAATGTTGTGAACAAGAAACTATGAGCTATCTGGATTTATTACTGGATATTGTTATTAAATTAGATTTTCCAGAAAAACTTGTCACGTTTCTTCTTCAGCTGTTGCCAGACCAAAAATACAAGATTGCCTTTACTCAAAAGTTCTGTCAAAAATATCAAGAAATTGGGAAGTCGTTGACAATGTGCACGACGTTAGAAGAAGTGGAACAACTTTCAAACAGCATAGTGCACATTAGTGTTCAGCTTTTTAGCAACCAAATTCTTGTTGCAAAGATGGTTACTGAAAAGAATTTATTACATGTCATGGTGAAGGTTCTTCAAGAAATGGTTAGATCAACACTTCAACCAATGACAGTTAATGATTACTGCGTGGATCATCTCATAGTTGACTGTGATAAAGCAGTGATTAAATATCATTGTTATTGGCCAGTGATTAGTGATTTAATTAATGTTCTTACCCATGAAAAAATTGCTTACATCTTTATGCAAGATATTGAATTAATTGAAAAATGGATGAACTTCTTAGCTTGTCTGACCGGGATAAATCGTAACAAACGTGTTATATCTCGTCATATTGAATACGAGCCTACCGTATACAATGCAGCTTATTCTATCGAAATTGAAGCCGCTGCTTCTCCTATGTGGAGTCTTATTGCTGCATCATCAGTGTTGAATGATAAAAGTTGTTTGCTGAATATTATCAATCGTGCATCCAGGGCCTTGGCGAAATGGCTGATGAAAATTGCTCTAAAGCCATCACGGTCAGAAGTCAGTTTTCATCTTCCTTTGCTTCGCTATTTTTCTGCTTTCGTTCGAAAGGCAATGTTGCAGTTCAATATGAGATTGCAAGACTTTCGTTTGGACTTGAGTCTTTTAACGAAAGTAATGGAGTGGCCAATGAGTATTCAGGCCGCCGTTTGTGAGATTCGTGCTGGTTTATGGGTGCGTAATGGTCATCAGATCCAAGCACAAAGTTCGTGGTATCAACAATGTCATTTTTGTAATTCCTTGTTTGATTTGGACATCTTTGCACTCCAGGTATGTGCTGCTCAATTGGATCCAGAATACTTTTTGAGTGTTCTTTTGGATAGTTTTCGTGTTCACGATTGGTTTCACTTTCGAGCTGAAACGAAATTGTGTTTTCCTGGTATTGATGACGATGTTAAAGAAATGATGGTTGAAGGTGTTCTGACGTTAATTGTGACTCTTCTAAGCTGCAGACTTCATTTTGGAATGAAGCAAGAAGAGACGTTACGTCTTGAAATGGTGACTATCTTGTGTTTTGCTGATAGAACTCATAGTCAACTTCGGTCTGGTCAAACACTGAACACTCAGCTTTTTGAAAAAGTTCTGAAAGAGATTTCCGATTACAAACATCCTGGTTGTGATAGTACTGGTATGCAACAAGGAATGTACACTCTTAAACAAGAAATTTGGGATTCTGATTTTGATCCTGTTCACGCTTTGCTGAGAGCGTTTAACAGACGAGAATTTCAGTCTGCAATGGATCGATATACTGCTCATGTACGTCAACAGGAGCCGTCATGCGTTGGTTCTTTATGGCCACCATTTCGACCTCTTCGTCCAGTGCCAGAATCTTTTAACGGACTGTTTAGATTGCTTCACTGCAAGAAGCTTCATCGGATGTTATACTTCATATTATACAAGGCAACGTCCAGTGTTACTCCGATTTCTGAAAGCATTATTTATTTGACAATTCATCTCATAACCTTGGCCATACAATCCCGTCCTTCGTTATTCAAGAAGTTACCAAGTCCATATCAGCCTTCTATTATGGATATCAGTGACATTGGTTGTATTATCGTTTCAAAATGTGTTCATTTTCTCGGCACTCACGGAAAAGGTGTTAAAGACCTACACAATGGGGCAGATCTCAGCAAAATTAACGGTTCATTGATGTCAAAGCTACTTTCTAATCCTGACATGGTTCTTGATAAAAATATGGTGTCAGTGCACGACATATCTTTGATACTTGATCACACTTTATACTGTCGTATGAAGCCTCCACTGTTCGCTTCTATGTTGCCATACATGAAAACTGTATTAAGCAGTGTTTTAACTAACTCTTGTTCTAAAATCGAGAAAGAATCCCACTTACAACACATCCAATTCTTATTAGAAACTCTTCCAGTTCCCAGATATAACTTAGTCAAAACACTGATTGCCTATTTAATTCAGTTTATCGAGAGAGAAAATGTTCCCATGGAAAATATTTCCATTATTTCTAATGACTTACAGCCAAGTGAATTCAGGATGCTATTTGCGTATCTCATCAACTATTATGAGAAATTGTTTCGGGTTTATCCACCACGTGATGGTCTTCCAACAGATATTTCAAAATTAGAATTTCCTTCGAATAATCTTGTTGAAAATATACGACATGAACCAAGAATTCTCCACAAGTCAAAAAGTTTATATGATGATCTTTGTAGCCAAGAAGATATACAGGAACCGTCGAGTGCTCTTATCTCGTGTAGACCAAGCACAGAGAGTCTAGTTGAAGACTTTATTGAGATCACTCATGCCTCAAAGGGAACGGCTGTTTCTTTACTTGATCATTGTCAACAAAACCTTGAAGTAGCAGTTAACATTTTTCTCGAAAGTTCTTCATCTTGGGAAGAAGCTATGTCCGAGTCTTCTTCCAATATAGCAATGGACACTGATGTTTCCGAGACTGAGTTTGAAACGGCAGCAACGGTCTGGTGTGGGACGGAGAATGGATTATTGTCAGGCTCTGGTGATATTTCGAGGGAACATTCTGTTGCCCGTGGATATTTAAACGACAGTATTTTGAGTTTATTGATGAAGTTGAAATCAGTTCTCTTGATGTCAGTTGGTTCACCATTATCACCAAGATCTCCAAGTGCTACAGTAATAAACGACGGCGTAAGAAAATTAGAAAAGCTTTTGGAGATTATTTATCAGTCAAGTTCATCTAACGTACAAGCTATTTCTAAACTTGATACGTGTTCCTTGAGTCCAACAAATGATATGGAAGATCCACTCGCTAAACAAGAACTCAAGCGAAAAAGAGCTCGTGAAAGGCAACAAAAAGTTATGGCTGACTTTGCTACCAAACAGCAAGTGTTTCTTAAAAATGTTTTTGAACAAGGTGGATCTGAAGAAGAAGATAGTGGTGTGCGTTGTAAAAGGAGTATGACGGAATTATTTGATTGTGCCATATGTGGTCAGCAGAGTGTACCATCAAGTGAGGAGGAGCCTGTGGGTTTTGTTGCGTTCTTGCAATCAGGAACAGTATTGAAACATCGTCGTAGGTCCGCAGATTTATCTAAAGTACCCTATATCTCTGATGAAGGAACATCTAATGATTCGTACTGTTGTGGAGCTGTATACTCCGCAAGGAAAAAGTTTCTGTTAACTTATTTCGAAAAGGTAACGGCTACTCAAGCTTGTGAACTTGGTATTGATGGTGGAGTTCATATTCAGTCATGTGGTCATTGTCTTCATCTTAAGTGTCAACAATCTTATCTACAGTCTCTTAAGAAGGAGCGAGAATCTCCACGTGTTCACCAATCTCATGCATATGATCCAACAAAAGAAGAATTTATTTGCCCTGTTTGTCGACGCTTGTGTAATGCTATCTTACCAATATTGCCTTCTGATGTTATGCCGTCTGCTTGTAACAAATTCAAGGAGACATGTCACCGAGAAGGTATGGCTGAATTGGAGTCGACGCTTGCAAAATTTTGCAATAATAATTCGACGAGGTTAACTAAGAGTGCTCAGCAGCCCAGTGCCTTAAGTGCCTCTATTTCATCCTTAGTGCAAGCTATCAATCGCTTAGATTTAAATAAAGAACGAGAGCACACTACAATGTCTGAACATAGGTTTGCTCTTATTGTTGAAACTGCAAGGTCTAATCTTGAGGCTGAGCACATTGCAATTCAAGCTGGAAAACTATCGTGCAGTAGAAGACCTTTTTATGGGACGCTGTTACGAACATTACAATACCAAAGTCAAACACTTGTCCGTCCAATGTTTCATGTCTTGGCTATTCTGACTGGAAAATCCGTCGAATCTAATGATATAAGACTTGAGACAAGATCATGTAGGAATGATGTTCCACTGTTGCTGCGAGATTGTGTTTCTTTGCTACTTCAACTGATCTTATCTTGGCCAGCTCCACTTAACCTAGGATCTTTCCGATGTCTGGTACAAATTGTATTCAATGTCGTTTTTATTCAGGCCTTGGTTAAAACATGCTGTGCATTCACGGCAGACGATAGGTTATCATGGCAAGTTACGGCAAATAAAGTTCAGGGAAAACGTCAGACTCGTTTATCTACTCAGTTTCTACTGGGTTATGTTTGCTCGCAGCTTAGAGATGCTAAATTGTGCCAAGAATCGCAAGAATGTCCTGGAATATCTCAGTCGGTGTGGTCTCCTCATACAGTAGAGGCAACTATTCAAAAGCTCTGTCTTCCATTTCTTCGTCTCGTCTCATCCTTATCTTCTCTCTGCTACTCTACTGATAACCCAGTTATGCAGGAAGAAGAAAATGAATTTTATTTATTAACATTATCCCTCGGCCTTCATGATCAGACTGCTGTCAGCTCAACAGTCTCTATCAGTGATTGTTTTAAATGGTCACATGACTGTCCTGTATCTCTTGTAAAGAAGTGGTGTAAACAACTGTGTACTATGTCTCGACGACATGAAATATTTCCCAAGGATTTGCTACCAGGAATGGATGATTGGCAGGTTCCAAGATTAATGCCATTACCTGAACATTATGACAGTTTGTTTCAAAATTATCGGAAGAAAAAATGCACAGAGTGTGGAACAAATCCAGATGAGCCTACGCTGTGCCTGGTTTGCGGTACCTTCGTTTGTCTCAGAGGAAAATGTTGTGAACGTGGAGGAACACGGGAATGTGTTTCGCACGCAATGGAATGTGGGTATGGGACTGCTGTATTTTTAATTATGATGTCATCCAGTATATTTGTCATCCGCGGCGAGAAAGCAAGTGTTTGGGGGTCTGTTTACCTTGATGAATTTGGAGAAGAAGATATTGATTTAAGACGAGGCAAACCCTTATTTCTGAGTAGAGATCGTTATAACAGACTTCAAGAGCAGTGGATAACTCATAACTTCGATAGTATTTGTAAAACATGGATGCAGCACAACAATAATTTATAA

Transcript

Ppa0G291790

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1QJX5	E3 ubiquitin-protein ligase ubr3 OS=Danio rerio OX=7955 GN=ubr3 PE=2 SV=2
Q5U430	E3 ubiquitin-protein ligase UBR3 OS=Mus musculus OX=10090 GN=Ubr3 PE=1 SV=3
Q6ZT12	E3 ubiquitin-protein ligase UBR3 OS=Homo sapiens OX=9606 GN=UBR3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002540 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|UBR-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18995 all species →	PRT6_C	Proteolysis_6 C-terminal	Domain	Interproscan
PF02207 all species →	zf-UBR	Putative zinc finger in N-recognin (UBR box)	Family	Interproscan
PF14555 all species →	UBA_4	UBA-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008936 all species →	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR044046 all species →	Domain	E3 ubiquitin-protein ligase UBR-like, C-terminal	Interproscan
IPR039164 all species →	Family	E3 ubiquitin-protein ligase UBR1-like	Interproscan
IPR003126 all species →	Domain	Zinc finger, UBR-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21497 all species →	UBIQUITIN LIGASE E3 ALPHA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000151 all species →	Cellular Component	ubiquitin ligase complex	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0071596 all species →	Biological Process	ubiquitin-dependent protein catabolic process via the N-end rule pathway	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11978	UBR3; E3 ubiquitin-protein ligase UBR3	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.