Gene detail

Detailed information of Ppa0G291980 in Paragorgia papillata

Genomic Location: Contig00435:1326920...1351553
NR annotation: XP_028394161.1, extended synaptotagmin-2-like isoform X1 [Dendronephthya gigantea]
Species Paragorgia papillata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Ppa0G291980

ATGGCTGATATAAAAGAAAAAGGCGAAGTTTCTGTCGCCGCCCAAGAAACGAAAACGGAAGACAAAGACCAATCCGAAAAGAAAATTGGCAAAGAAGAACCTCTAAGCATTGTAAAATTACTGCAAGATATGTTTGTTTTGCAAAAGATTGTAAGCTTTCTGAAATACATGGCAGTGTTTTTTTTCGTGTGGCTTGTTGGTCGTCTAGGGTTTGACTACAAGTGGGCCCTGATGGCAACTATCGGTTTCTATATCTGGAAAAGTCGACGAGATGAAAAGAAACGAAAGAAAGAAACTGCACAAGATTTGGCAAAGAACGAGGAAGATGTAATTAGAGCTCGACTAGGAGACCTGCCATCGTGGGTATTTTTTCCAGATGTGGAAAGGGCAGAATGGTTGAACAAGTTTATTGCTCAACTTTGGCCTTATGTGAATGAAATGGTCATCAAAATTCTGAAGGATACTGTTGAGCCTCAAATCCAGAAGTCAGTTCCAGGAATGTTGAAGTCTATTCAGTTTACAGAAATTTCTCTTGGGAACCGGCCTCCTCGGGTTGGTGGGGTTAAAGTTTACACAGAAAATGTCAAAAGATCAGAAGTTATTATGGATATTGATTTTATCTATTCAGGAGATGCAGACTTTGAATTATCTGTAAAATGTGTAAAAGTTGGGGTGGAAGATGTACAGGTTCGAGGCACTTTGCGTGTCATTATGTCACCATTAGTTCCTGCATCTCCACTTGTTGCTGGCATATCAGTATTCTTCCTGGACAAACCTGAATTGGATTTCAATCTTACTAACCTTTTAGATCTATTTGATATTCCTGGGATTAGTGGAATACTACGTGGAGCTATTGGTGACGTTATTGCATCTTTCTGTGTCCTTCCTAACCGAATATCTGTTCCCTTGCTGAATGATGTGAGCATTTTTGATCTGAAATATCCCATGCCGAAGGGTGTTCTTCGGTTAGAAGTTGTAGAGGCACGTGAGTTGGAGAAAAAGGACATTGGCTTTTTGAAGAAGGGATCGGCTGATCCTTTCGTTGTTGTTAAAGTGGGAGCCGAATCTTTTAAAACAGAAGTCAAGAAGAATTCGTTATCTCCTGTCTGGAATGAAACATTTGAGATCTTTGTTGACAGCCCACAAGGCCAGAAGCTTAAAATGCATCTGTATGATTATGACAAAACGTCGGATAACGAATCTATGGGATATGTTGAAATGGAAATTTCAAGTATTGCTGCTCAAGGATTGTGTGATGTGTGGCTTCCACTCGAAGATACACCGTCTGGTGAAGTGCACGTGAAGTGCACGTGGTTTGCGTTGTCAAGCGATCCTAAAGACCTAATGCTTGCCGAACCAAGTAAAGGAGAACAAGCCAAAGACATGTTAGCCACTGCAGCTTTATTTGTGAAACTGGACTCTGCTAAAAAATTACCGGTTGTAAACAAAGTAAAGCGATCAACAAGTGCCATGTGTAAATTAACATTGGGAAACAAAACTGTGGAGAGCCAGGTTGTTGAGGACACGCTCGATCCTGTTTGGGACGAATTTTGTCGTTTTCTGGTCATCAACGCCAACTACCAAGAGCTTAATATTGAGGTCATTGATAATAACAAAGAGCGTACTATTGGTGTTGTAGAGATTCCATTAAACTCTTTAATTGACGGGAATGACATGTCGTGTGAGCAACCATTCCCTCTTAAAGACTCTGGTCCTGAAAGCGCCATTGTCTGTGAAGTCAAACTCAGGGCATTAGTTAATCGCCAAGTTAAATATGATGTTGGTAGTGATGTGCCTGCCGTTAGTAAAGCTACCAAGACTGAGAAAGAAGCTGCCCCAGTTAAACCAGGCTCAGCTCCTGCACAAAAACCTCCTGTCCAAAAATCGCCACAGCCTGAAATTGCTAAACCTATCCCTCCTGCGGATAAACGTGAAAGTGAGGACAAAGTAAGACAGAGGAACCCAGCTCAAAGTGCTTCACAAGCAGAGTCCAAACCTCCACCAGGAGAAGTGTCTGGAGAAATAAAACTTTCCATTTCGTATAAAGACAAGACACTTTTTGTTGAGGTCATCTCTGCCAGAAAATTACAACCATGTGATTCCGATGGGTTGGCTGACCCATATGTTCGTCTATTTCTTCTTCCGGATAAGTCCAAATCATCTCGTTGCAAAACAGATGTAGTCAAAAACTCTTTGAACCCCACATTCAATGAAAAATTTGACTGGTCTCTGGAAAAAGACGAAATTCAAAAAAGAACTTTGGAATGCATTGTGAAAAATGACGTATCATTTTTCTCCAGATCTAAGACAACAATGGGACGAGTTGAAATCAACTTACCCTCCCTTGATTTGGTGAAGGGGGTTACTAAGTGGTTTACACTGTATGATGAACCAGACAGCGATTGA

Transcript

Ppa0G291980

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3TZZ7	Extended synaptotagmin-2 OS=Mus musculus OX=10090 GN=Esyt2 PE=1 SV=1
A0FGR8	Extended synaptotagmin-2 OS=Homo sapiens OX=9606 GN=ESYT2 PE=1 SV=1
Q5M7N9	Extended synaptotagmin-3 OS=Xenopus tropicalis OX=8364 GN=esyt3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001220 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF17047 all species →	SMP_LBD	Synaptotagmin-like mitochondrial-lipid-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031468 all species →	Domain	Synaptotagmin-like mitochondrial-lipid-binding domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR051634 all species →	Family	Extended Synaptotagmin	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR039010 all species →	Domain	Synaptotagmin, SMP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45761 all species →	EXTENDED SYNAPTOTAGMIN-LIKE PROTEIN 2, ISOFORM C	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008289 all species →	Molecular Function	lipid binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005544 all species →	Molecular Function	calcium-dependent phospholipid binding	Interproscan
GO:0008429 all species →	Molecular Function	phosphatidylethanolamine binding	Interproscan
GO:0031210 all species →	Molecular Function	phosphatidylcholine binding	Interproscan
GO:0031227 all species →	Cellular Component	obsolete intrinsic component of endoplasmic reticulum membrane	Interproscan
GO:0031234 all species →	Cellular Component	extrinsic component of cytoplasmic side of plasma membrane	Interproscan
GO:0035091 all species →	Molecular Function	phosphatidylinositol binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for Ppa0G291980.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.