Genomic Location: Contig00435:1804514...1858676
NR annotation: CAB4000172.1, collagen alpha-1(I) chain-like, partial [Paramuricea clavata]
| CDS | |||||
| Ppa0G292210 | |||||
| Transcript |
| Ppa0G292210 |
| Protein |
| Ppa0G292210 |
| Uniprot term | Description |
|---|---|
| Q91717 | Collagen alpha-1(II) chain OS=Xenopus laevis OX=8355 GN=col2a1 PE=2 SV=2 |
| Q6P4Z2 | Collagen alpha-1(II) chain OS=Xenopus tropicalis OX=8364 GN=col2a1 PE=2 SV=1 |
| B8V7R6 | Collagen alpha chain (Fragment) OS=Acropora millepora OX=45264 PE=1 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01410 | COLFI | Fibrillar collagen C-terminal domain | Family | Interproscan |
| PF01391 | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000885 | Domain | Fibrillar collagen, C-terminal | Interproscan |
| IPR050149 | Family | Collagen superfamily | Interproscan |
| IPR008160 | Repeat | Collagen triple helix repeat | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24023 | COLLAGEN ALPHA | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0005201 | Molecular Function | extracellular matrix structural constituent | Interproscan |
| GO:0005615 | Cellular Component | extracellular space | Interproscan |
| GO:0031012 | Cellular Component | extracellular matrix | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K19719 | COL2A; collagen type II alpha | - | Glycosaminoglycan binding proteins | ko00536 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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